Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0928 ATGTTCTGGGTCGTCGTTCCGGCTCCCTCGCTATTCGTTCTGCGTCACTGCCGTTGCTCCTCCTCCTCTACCCACTCTGAAACTGTCTCGCCATTTCCAGGTGCGTTTCCTGCTCCTTGTGAAATCAGAAGAGTCACTGACAAAGTAAAACTTTTGATGGGTGTATCATCTGGCTCCAACGTCAACCAGCAATCTTCTTCTAAAATGCTACCTCCACGTCAGCAATCTCGTGTTGGAGGACTGCAAACTTCACTATCCCTAGTTTCTTCAGATCCTCGTCTCTCTCCTGAGGAACCTAGATCAAACTCTGACAATATTCGAGAATCTCCTACTGAAAGTGCAAGTTCACGAGAAACTTGGCCTACTGCTGAAGCTGTTGCAGGAAAGAAGATGGATAATGGGAAGGCTGAGAATGATTGCCCTGAAAAGTCAGTCATCCGTCGTGTTTCTAGTGCTGACAAAATCACTCTTCAGGACATAGGAAGAGAAAGGGTTGATATAATCTCTGAAAAGATGCATCATCTACCTGAAGAATTTTTACAAGAGCTGAAGAACAGTCTTCGAGTGATTCTTGAGGGAGGGAATGGTTCACAGCACAGGGAGGATTTCTTCACTTTGCAGAGGCTTGTTCAAAGTAGAACTGATTTAACAGCCAAGACATTGATTAGAGCACATCGTGTGCAGCTTGAAATCCTTGTTGCTATTAATACTGGAATTCAGGCATTTTTGCATCCCAACGTCAGTCTTTCACAAACTTCCCTCGTTGAGATCTTTGTGTACAAGAGATGCAGAAATATAGCTTGTCAAAACCAGCTTCCTGCTGATGACTGTACCTGTGAAATTTGCACCAGCAGAAATGGTTTCTGCAACCTCTGCATGTGTGTGATCTGCAACAAGTTTGACTTTGAAGTAAATACGTGCCGCTGGATTGGGTGTGATTTATGCTCTCATTGGACTCATACAGATTGTGCCATTCGTGATCAACTTATTTGCATGGGCCCTTCTGCAAAGAGTGGTGCAGGACCTAGTGAAATGTTTTTCAGGTGCCACGCGTGCAAGAGGACTTCAGAGCTGTTGGGTTGGGTTAAAGATGTTTTTCAGCATTGTGCCCCATCTTGGGATGGGGAGGCTTTAATGAGGGAACTTGATTTTGTTAGTAGGATCTTTAATGGTAGTAAAGACCCCAGAGGGAGGAAAGTATTCTGGAAGTGTGATGATCTAAAGGAGAAAATGAAAAATGGAATAGTGGAACCAAACGCTGCCTGCAGTGCAATATTGATGTTTTTCCAAGAGCTTGAGGTGGAATCCTCAAAGAGCCTTGAAAATGGAGAAAGTGGAAGGTTGATTGCTCCACAGGAGGCATGCAATAGAATTGCTGAAGTAGTGCAGGAGGCTATAAGAAAAATGGAGGTGGTAGCTGATGAGAAGATGAGAATGTTCAAGAAGGCTCGCATGGCTCTCGAGGCTTGTGATCGAGAATTAGCAGATAAGGCAAGGGAAGCGACAGAACTCAAGATAGACAGGCAAAAGAAGAAATTGCAGATAGAAGAACTGGAGAGAATTGTAAGGCTTAAAACTGCAGAGGCTGATATGTTCCAGCTTAAGGCCAATGAGGCTAAACGAGAGTGCGAAAGGCTTCAGAGAATCGCCCTCGCCAAATCCGATAAATCAGAGGAAGAATATACTAGCAACTACTTGAAACAACGATTAAGCGAGGCCGAAGCTGAGAAGCAATATATCTATGAGAAGATCAAATTGCAGGAGAGTTCCCGTGCTTCGCAGAGTAGTAGTGGGGACCCATCTCAGATGCTGATGTATTCCAAAATCCATGATCTTCTCTTTAGTGTACCTCCCAAGGCAGATAGTCAGCCTAATGAGCGCCACCCGTTCCAAACAAATCCATGA 1905 0.4451 MFWVVVPAPSLFVLRHCRCSSSSTHSETVSPFPGAFPAPCEIRRVTDKVKLLMGVSSGSNVNQQSSSKMLPPRQQSRVGGLQTSLSLVSSDPRLSPEEPRSNSDNIRESPTESASSRETWPTAEAVAGKKMDNGKAENDCPEKSVIRRVSSADKITLQDIGRERVDIISEKMHHLPEEFLQELKNSLRVILEGGNGSQHREDFFTLQRLVQSRTDLTAKTLIRAHRVQLEILVAINTGIQAFLHPNVSLSQTSLVEIFVYKRCRNIACQNQLPADDCTCEICTSRNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDQLICMGPSAKSGAGPSEMFFRCHACKRTSELLGWVKDVFQHCAPSWDGEALMRELDFVSRIFNGSKDPRGRKVFWKCDDLKEKMKNGIVEPNAACSAILMFFQELEVESSKSLENGESGRLIAPQEACNRIAEVVQEAIRKMEVVADEKMRMFKKARMALEACDRELADKAREATELKIDRQKKKLQIEELERIVRLKTAEADMFQLKANEAKRECERLQRIALAKSDKSEEEYTSNYLKQRLSEAEAEKQYIYEKIKLQESSRASQSSSGDPSQMLMYSKIHDLLFSVPPKADSQPNERHPFQTNP 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0928 634 MobiDBLite consensus disorder prediction 57 91 - -
Lele40g0928 634 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 254 275 IPR004082 -
Lele40g0928 634 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 300 320 IPR004082 -
Lele40g0928 634 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 213 228 IPR004082 -
Lele40g0928 634 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 228 243 IPR004082 -
Lele40g0928 634 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 555 577 IPR004082 -
Lele40g0928 634 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 171 193 IPR004082 -
Lele40g0928 634 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 516 536 IPR004082 -
Lele40g0928 634 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 373 392 IPR004082 -
Lele40g0928 634 MobiDBLite consensus disorder prediction 57 143 - -
Lele40g0928 634 PIRSF UCP025218 56 619 IPR004082 -
Lele40g0928 634 Pfam PHD - plant homeodomain finger protein 263 386 IPR032881 -
Lele40g0928 634 Coils Coil 487 556 - -
Lele40g0928 634 MobiDBLite consensus disorder prediction 615 634 - -
Lele40g0928 634 Pfam Coiled-coil region of Oberon 481 613 IPR032535 -
Lele40g0928 634 CDD PHD_OBE1_like 293 352 - -
Lele40g0928 634 SMART PHD_3 293 353 IPR001965 -
Lele40g0928 634 MobiDBLite consensus disorder prediction 106 120 - -
Lele40g0928 634 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 61 614 IPR004082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0928 Lele-ChrLele40 19835669 19839146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0928 263 365 PHD Gene Family AT5G57380 31.731 7.21e-09 57.0