Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0909 ATGGCGAAACCGGGAGTGTTGGAATCTGATCCAACGGTGACGGCGAAGGCAATGGAGCTCAAGAAGGAGTTGCAGAGACTGGTGAACTCAATTGTTGAAGATGAAGATCATTACGACATCGAGACCATCGATGCGACCATGGATACGCTGTCGTTGCTGAAGCAGCTGAAGCTCAGCACGAGATCGACGACGACGTCTTCTTCTTCGTCACTGTCTTTCACGCTTCGCCATAAAACCGGGTTGAATTGCCCAGAAGAATTCAAATGCCCTCTTTCCAAGCAAATGATGAGAGATCCTGTCATTGTGGCTTCTGGTCAGACGTACGACAGAACGTTCATTCAAAAGTGGCTGAAAGCCGGGAACCGGACATGCCCTCGGACACAGCAAGTCCTTTCACACCCTGTTCTCACTCCGAATTACCTAATAAAGGAAATGATTGAGCAATGGTGTAGAAACCAAGGGATTGAATTTTCCAACCATGTTCACTTTATCAATGAGGAAGCTATCATAGAACCCGCAGATCATGGTCATTTTCTTTCTTTGCTTGATAAAGTGTCTTCATCAGCACTTTCCGAACAGAAAGCCGCCGCGAAGGAGCTCCGGATTCTGACAAAGAAAATACCTTGTTTCAGGGTATTCTTCGGTGAGTGTGCGGGTGCCATTCCCAAATTTCTTAAACCAATCTGTGGTAGTCACTCTCTGGGTAATGTTCACCCTGACCTCCAAGAAGATGTTATCACAACACTCCTTAACATCTCCATCCATGACAACAACAAGAAGCTTGTAGCAGAGACTCCCATGGTGATTCCTCTCCTCATGAGGGCATTGAGAAGAGGAACAATCGCAACACGAAGCAACGCCGCCGCCGCCCTTTTCACATTGTCGGCTCTAGACTCAAACAAGGAACTTATAGGGAAATCTGGAGCCTTGAAGCCTCTGATTGACCTTTTAGAAGAAGGGCATCCCTTAGTCATGAAAGATGTTGCATCAGCAATTTTTACCTTATGTGTCCTTCAAGAGAACAAGGCAAGAGCAGTGAAGGATGGCACAGTGAAGGTGATTGTAAAGAAGATCGTTGACCGGGTTTATGTCGACGAACTACTAGCCATTCTCGCGCTGCTCTCGAGTCACCAGAATGCAATTCAGGACATGGGAGAGCTTGGAGCTGTTCCTTGCTTGTTGAGCTTAATCAGAGAGACCACTTGTGAACGAAACAAAGAGAATTGCATTGCAATCCTTCAAACTATTTGTCTGTATGACAGAATCAAGTTGAAGGAGATAAAGGAAGAAGAGAAAAGACATAGAACAATCTCTGAGCTTGCACAAAATGGAACTTCAAGGGCTAAGAGGAAGGCTGCTGGAATTCTTGAGAGGCTAAACAGGGTTGTTAATATTACACACACCGCATAA 1410 0.4567 MAKPGVLESDPTVTAKAMELKKELQRLVNSIVEDEDHYDIETIDATMDTLSLLKQLKLSTRSTTTSSSSSLSFTLRHKTGLNCPEEFKCPLSKQMMRDPVIVASGQTYDRTFIQKWLKAGNRTCPRTQQVLSHPVLTPNYLIKEMIEQWCRNQGIEFSNHVHFINEEAIIEPADHGHFLSLLDKVSSSALSEQKAAAKELRILTKKIPCFRVFFGECAGAIPKFLKPICGSHSLGNVHPDLQEDVITTLLNISIHDNNKKLVAETPMVIPLLMRALRRGTIATRSNAAAALFTLSALDSNKELIGKSGALKPLIDLLEEGHPLVMKDVASAIFTLCVLQENKARAVKDGTVKVIVKKIVDRVYVDELLAILALLSSHQNAIQDMGELGAVPCLLSLIRETTCERNKENCIAILQTICLYDRIKLKEIKEEEKRHRTISELAQNGTSRAKRKAAGILERLNRVVNITHTA 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0909 469 SMART arm_5 255 296 IPR000225 GO:0005515
Lele40g0909 469 SMART arm_5 297 337 IPR000225 GO:0005515
Lele40g0909 469 SMART arm_5 377 418 IPR000225 GO:0005515
Lele40g0909 469 Pfam U-box domain 84 153 IPR003613 GO:0004842|GO:0016567
Lele40g0909 469 Gene3D - 366 464 IPR011989 -
Lele40g0909 469 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 156 IPR013083 -
Lele40g0909 469 Gene3D - 217 365 IPR011989 -
Lele40g0909 469 FunFam RING-type E3 ubiquitin transferase 82 156 - -
Lele40g0909 469 ProSiteProfiles U-box domain profile. 82 156 IPR003613 GO:0004842|GO:0016567
Lele40g0909 469 SUPERFAMILY ARM repeat 174 459 IPR016024 -
Lele40g0909 469 CDD RING-Ubox_PUB 87 129 IPR045210 -
Lele40g0909 469 Coils Coil 17 37 - -
Lele40g0909 469 SUPERFAMILY RING/U-box 81 159 - -
Lele40g0909 469 SMART Ubox_2 86 149 IPR003613 GO:0004842|GO:0016567
Lele40g0909 469 FunFam RING-type E3 ubiquitin transferase 168 465 - -
Lele40g0909 469 PANTHER U BOX DOMAIN-CONTAINING 20 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0909 Lele-ChrLele40 19634735 19638396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0909 145 469 U-box Gene Family AT3G07360 60.606 1.03e-133 387