Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0908 ATGGTGACATACGGAGGTTCTTCGGCGTCTCACCAAGCGGAGCAACTGAGACTACTCGGAAACTTTTACTTCAAGCAAGACCGTTTCGGGGCCGCCATTGATGCTTATACCCAGGCAACCACTCTATGCCCTAACGTCCCGGTTTATTGGACTAATCGTGCTCTGTGTCTCCGTAAGCGCAATGACTGGGCTAGAGCAGAGGAAGATAGCCGGAGAGCCATTCAACTGGACAACAAGTCGGTTAAGGCCCATTATATTTTGGGACTTGCATTGCTGCAGAGACAAGAATATATCGAAGGGGTTAGAGAATTGGAGAAGGCTTTGGATATTCGGAGAGGCACCGATGCTAATGACTATATGGTAGAGGAGATCTGGCAGGAGCTTGCAAAAGCAAAATATCTACAGTGGGAAAATGCATTTACCAAGAGATCATGGGAATTGCAGCGTTTGAAAGAAGCTTGTGAGTGTGCTCTAAATGAAAAGCATTCTAAAATGGAAGGGTTTATAGATGAAGTTGAAGCTTTGCACTCACAAGAACTTAATGCTTTACAAAGATTTTTCTCTGAAGCTGCAGAGGTCGACACGCCTACTGAGGTCCCAGATTACTTATGCTGTAGAATTACTCTCGATATTCTTCGAGATCCGGTAATTACTCCAAGTGGACATACATATGAGAGGGCAGCGATTCTTCAACACCTTCAGAGGAGTGAGTTTGATCCAATTACAAGGGAACCACTTGATGCATCACAGCTTGTATCAAACTTGGCAATAAAGGAAGCAGTTCAGGTATTCTTTGACAAACATGGTTGGGCTTACAAGAGGCAGAAAGATGATCATTGA 840 0.444 MVTYGGSSASHQAEQLRLLGNFYFKQDRFGAAIDAYTQATTLCPNVPVYWTNRALCLRKRNDWARAEEDSRRAIQLDNKSVKAHYILGLALLQRQEYIEGVRELEKALDIRRGTDANDYMVEEIWQELAKAKYLQWENAFTKRSWELQRLKEACECALNEKHSKMEGFIDEVEALHSQELNALQRFFSEAAEVDTPTEVPDYLCCRITLDILRDPVITPSGHTYERAAILQHLQRSEFDPITREPLDASQLVSNLAIKEAVQVFFDKHGWAYKRQKDDH 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0908 279 ProSiteProfiles U-box domain profile. 198 271 IPR003613 GO:0004842|GO:0016567
Lele40g0908 279 Pfam U-box domain 199 270 IPR003613 GO:0004842|GO:0016567
Lele40g0908 279 ProSiteProfiles TPR repeat profile. 13 46 IPR019734 GO:0005515
Lele40g0908 279 SUPERFAMILY TPR-like 12 134 IPR011990 GO:0005515
Lele40g0908 279 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 7 273 IPR045200 GO:0000209|GO:0061630
Lele40g0908 279 Pfam Tetratricopeptide repeat 18 45 IPR019734 GO:0005515
Lele40g0908 279 Gene3D Tetratricopeptide repeat domain 6 143 IPR011990 GO:0005515
Lele40g0908 279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 277 IPR013083 -
Lele40g0908 279 SMART Ubox_2 202 264 IPR003613 GO:0004842|GO:0016567
Lele40g0908 279 SUPERFAMILY RING/U-box 194 272 - -
Lele40g0908 279 SMART tpr_5 13 46 IPR019734 GO:0005515
Lele40g0908 279 SMART tpr_5 81 114 IPR019734 GO:0005515
Lele40g0908 279 SMART tpr_5 47 80 IPR019734 GO:0005515
Lele40g0908 279 CDD RING-Ubox_CHIP 199 264 IPR045202 -
Lele40g0908 279 Pfam Anaphase-promoting complex, cyclosome, subunit 3 48 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0908 Lele-ChrLele40 19629488 19631749 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0908 1 273 U-box Gene Family AT3G07370 60.432 1.02e-118 340