Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0861 ATGAAAGAAAGAGCTTCACAGTCCCAAAGAAAAAGCAAAAATCCTTCATTCTTCAAGGTTCTGATCAAAGATTTCTCTACACGCTTGCGAATTCCATCCGCGTTTATTAAAAAGGTGTTTGGTAAAGACGTGCCAAAGAAAGCTATTCTTGAGAATTATTATGGTAAATCTGAAGAAGTCGAACTGGTAAAGCATGAGAATCGAATTTGTTTCTGTAAGCGATGTAGTAAATTTGTTGAGGACAATAAATTAGAGACTGGAGATTTCTTAGTGTTTAAATATGTTTCAGATTATTCAAAGTTTAAGGTCAAAATCTATGGCAAATCTTGCTGCGAGAAAGAATATTCTGAACCTGGGAAAAACGAAGGTGAGAGAAATAATAATACTGTTGGAGATGAACGAAAAAGAAAGAGGGAAGAAGAAGAAGAACATGATGGAGAATTGAAAGCTGCAAAAAGGATTGAGTCATCAGATTCTGATATTGGAGACGAAGATTCTGAAGATGAACCAATTAATATTGATTCTGAATCTTCTCATCGTCCTATTGTTGAAGAAGAAGAAGTTGGTAATTCAAAGCAGCCAACAAGTGAAAAGAAGGGCCATGGAGAGGGCAAAAGATTGCATACTGATGATAACCAAATAGAATTCGAATCTCAGAATCCTTCCTTCCAAGTCAAACTCAAATCTTCAAGTGCCAATAACTATCTGAATATACCATTAAGCTTTTCGAGGGAATATATAATAAGGAAGGAAAGGAAAAGGGAGGAGATCACAATTGAGACGCCCGACAAAATGTGGGAGATAGGTCTTCTAGTGTTGTGGGCAGTTGGGAAGAAGAAGAAGAAGAAGAAGAAGGAACTGGCGGGAGCAAGACTGACTCAAGGATGGAGGAACTTAACATCAGAATATCGTCTCCAAATGGGAGATGCCTGCGTCTTTGAATTGATCCAACCAACTCGTGACCTTGTCTTTCGTCTTCATGTTAGTCGACAGGATCCTCAAAATAACAAGTTCATTCATATACTTTAG 1029 0.3761 MKERASQSQRKSKNPSFFKVLIKDFSTRLRIPSAFIKKVFGKDVPKKAILENYYGKSEEVELVKHENRICFCKRCSKFVEDNKLETGDFLVFKYVSDYSKFKVKIYGKSCCEKEYSEPGKNEGERNNNTVGDERKRKREEEEEHDGELKAAKRIESSDSDIGDEDSEDEPINIDSESSHRPIVEEEEVGNSKQPTSEKKGHGEGKRLHTDDNQIEFESQNPSFQVKLKSSSANNYLNIPLSFSREYIIRKERKREEITIETPDKMWEIGLLVLWAVGKKKKKKKKELAGARLTQGWRNLTSEYRLQMGDACVFELIQPTRDLVFRLHVSRQDPQNNKFIHIL 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0861 342 Pfam B3 DNA binding domain 17 107 IPR003340 GO:0003677
Lele40g0861 342 Pfam B3 DNA binding domain 225 328 IPR003340 GO:0003677
Lele40g0861 342 ProSiteProfiles B3 DNA-binding domain profile. 14 109 IPR003340 GO:0003677
Lele40g0861 342 MobiDBLite consensus disorder prediction 113 159 - -
Lele40g0861 342 CDD B3_DNA 221 327 IPR003340 GO:0003677
Lele40g0861 342 CDD B3_DNA 15 106 IPR003340 GO:0003677
Lele40g0861 342 SUPERFAMILY DNA-binding pseudobarrel domain 12 116 IPR015300 -
Lele40g0861 342 ProSiteProfiles B3 DNA-binding domain profile. 221 332 IPR003340 GO:0003677
Lele40g0861 342 PANTHER B3 DOMAIN-CONTAINING 8 318 - -
Lele40g0861 342 Gene3D - 8 111 IPR015300 -
Lele40g0861 342 Gene3D - 204 332 IPR015300 -
Lele40g0861 342 MobiDBLite consensus disorder prediction 113 207 - -
Lele40g0861 342 SUPERFAMILY DNA-binding pseudobarrel domain 216 330 IPR015300 -
Lele40g0861 342 SMART B3_2 223 330 IPR003340 GO:0003677
Lele40g0861 342 SMART B3_2 17 109 IPR003340 GO:0003677
Lele40g0861 342 MobiDBLite consensus disorder prediction 172 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0861 Lele-ChrLele40 19160714 19165748 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0861 17 330 B3 DNA Binding Superfamily AT3G18990 24.581 1.24e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele40g0861 B3 2.7e-10 CL0405