Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0828 ATGGCAGCGGATTCTTCTCTCGAGGGTTTCACACTTGATCCTGCTAAATGCAGTAAGTTGAGCATGGAGGAAAAAAGAGAACTTGTATATGAAATATCTAAGTGGCCAAATGATGCATTGGAAATGCTACAGTTATGGAGCCGTCAAGAGATTTTACAAATCCTTTGTGCTGAGATGGGGAAAGAGAGGAAGTATACTGGATTAACAAAGGTGAAAATTATAGAAAACCTTCTGAAAATTGTTTCTGAAAAGAAATCTGGAGGTCAAGAAATTGCAACAGACCTTGAACCACATTCTTCTACTTCACATGGCCAGAAACCTGCTAAAAGGCAGAGGAAAAATGAGAATCCGTCTCGATTACCTCTCCCTGTAAATGATGTTTCTGTGAACAATGAAGTTGGAGATGTGAGTAGTATTTCATACTGCAAAAACACAGCTTGCAAAGCTACCCTAAGTGAAGCAGATGCTTTTTGTAGAAGATGTTCATGCTGCATTTGTCATAAATATGATGACAACAAAGATCCTAGCCTTTGGTTAATATGTGGCTCTGAGCCTCCATTTCCTAGTGTTTCTTGTGGCTTGTCATGTCATCTTGAGTGTGCTTTAAAGCATGATAATTCTGGCATTGCCAAAGATGGAAAACGTCCCAAGCTTGATGGAAGCTTCTACTGCATCTCATGTGGGAAAGTGAATGATTTGCTCGGATGCTGGAGAAAGCAACTGATGGTGGCAAAAGATACTAGACGTGTTGACATACTATGCTACCGTGTTTCCTTGAGCCAAAGAATTTTACAAGGGACTGAAAAGTATAAAAAACTTTATGAAATTGTTAATGAGACGGTGAAGAAACTTGAACCTGAATTGGGCCCACTAACTGGTTCACCAGTGAAGATTGGTAGGGGCATTGTGAACAGACTTTCATCAGGGCCAGAGGTTCAGAAACTCTGTGGTTTGGCTTTGGAATCATTAGATTCTTTTGTTTCTAAAAGGGTTATGCCTCCATCACCTAATCCAACAATTCAAGATGCAAATTTGATTGCTACAAATATGGTGAGATTCGAAGATGTTAGAGATACATCCCTGACTGTGATTTTGGGTTCTGAAGATGCTTCTGAAGAAAATATCAGTGGCTATTCCCTGTGGCATCGCAAGTCTATTGACGTGGAATATCCAGTTGAACCAACCTGTACTTTGGTTTTACCTGACAGAAGTTTCAATTTAAGGGGTCTGATTCCAGTTACAAAATATAGTTTCAAAGTCTTTTCCTATAATGGCACAAGGGAGATGGGTACGTGTGAAGTTCAAATGTCAACAGAGCCCGGCGAGTATGAAGTTCCTAACTGTTCAGCAACAGAAAGAAGTCAGAGCCCAGTAACCAACTGTAGCAGCCATTCCAATCCTTCGTCAGTGGAAGATGAAACTAATAACAGTAATCCATTTAGTGATCAGACCGATGATCGGGCAGATGACTATCTTACTTATCACAAGGATGCTGACAAGCTCGCTTCTGAAAATTTATCCAATGATGTTATCAAGTGTTCCAACACCGTTGGAGGTGGACCACCTACTGATGCAGATTCTTTGTCAGAAAAGCAACATGCTCGAGGCTTAGCTGTGAACGTACCTGGTTCTGAAATTCTAAAGCTTGAAAATAATCATTCGCCAGAGGGACAAATCACCGAGGACTTGAGCACTGATGATGGGTTGAATTCCCCTGTTCAGATTGGGAGGGAATGTGTGCCACTTGTACGTAGCTTGGAAGCAAGCTTACCTATTACTCCTTGCAAGTTGGAAATACTTAAGGATGGGCTGGGAAGAACCGGGAGATCTAAGTCCATGGGTAAGGATCAAGAAAAAGGTTCTGGGAAGAGAGAGGGCCCTCAAGATGGTAGCACATCTAAGAAGAGAGGAACTGAACAAAGGCAACATGAGATTTGCGCAGCCAATGGGTATTCGGATCGGGATTTCGAGTATTACGTGAAAGTGATCAGATGGCTGGAGTGTGAAGGGCACATAGAAAAGAACTTCAGACAGAAATTTTTGACTTGGTACAGCTTGAGAGCAACACCACAGGAAGTAAAGATTGTGAAAGTATATATTGATACATTCCTTGAAGATCCAGCTTCTCTTGCAGAACAGCTTGTCGACACCTTCTCAGAATGCATATCAAACAACAAGAAACCATCTGTTGTGCCAGCTGGGTTCTGCATGAAGCTCTGGCATTGA 2226 0.4164 MAADSSLEGFTLDPAKCSKLSMEEKRELVYEISKWPNDALEMLQLWSRQEILQILCAEMGKERKYTGLTKVKIIENLLKIVSEKKSGGQEIATDLEPHSSTSHGQKPAKRQRKNENPSRLPLPVNDVSVNNEVGDVSSISYCKNTACKATLSEADAFCRRCSCCICHKYDDNKDPSLWLICGSEPPFPSVSCGLSCHLECALKHDNSGIAKDGKRPKLDGSFYCISCGKVNDLLGCWRKQLMVAKDTRRVDILCYRVSLSQRILQGTEKYKKLYEIVNETVKKLEPELGPLTGSPVKIGRGIVNRLSSGPEVQKLCGLALESLDSFVSKRVMPPSPNPTIQDANLIATNMVRFEDVRDTSLTVILGSEDASEENISGYSLWHRKSIDVEYPVEPTCTLVLPDRSFNLRGLIPVTKYSFKVFSYNGTREMGTCEVQMSTEPGEYEVPNCSATERSQSPVTNCSSHSNPSSVEDETNNSNPFSDQTDDRADDYLTYHKDADKLASENLSNDVIKCSNTVGGGPPTDADSLSEKQHARGLAVNVPGSEILKLENNHSPEGQITEDLSTDDGLNSPVQIGRECVPLVRSLEASLPITPCKLEILKDGLGRTGRSKSMGKDQEKGSGKREGPQDGSTSKKRGTEQRQHEICAANGYSDRDFEYYVKVIRWLECEGHIEKNFRQKFLTWYSLRATPQEVKIVKVYIDTFLEDPASLAEQLVDTFSECISNNKKPSVVPAGFCMKLWH 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0828 741 Pfam PHD - plant homeodomain finger protein 142 261 IPR032881 -
Lele40g0828 741 MobiDBLite consensus disorder prediction 89 124 - -
Lele40g0828 741 MobiDBLite consensus disorder prediction 443 482 - -
Lele40g0828 741 PANTHER VIN3-LIKE PROTEIN 2-RELATED 10 741 IPR044514 GO:0010048|GO:0040029
Lele40g0828 741 MobiDBLite consensus disorder prediction 443 487 - -
Lele40g0828 741 ProSiteProfiles Fibronectin type-III domain profile. 347 441 IPR003961 GO:0005515
Lele40g0828 741 MobiDBLite consensus disorder prediction 513 534 - -
Lele40g0828 741 CDD PHD_VIN3_plant 162 227 - -
Lele40g0828 741 MobiDBLite consensus disorder prediction 606 642 - -
Lele40g0828 741 SUPERFAMILY Fibronectin type III 351 426 IPR036116 GO:0005515
Lele40g0828 741 Gene3D Immunoglobulins 347 443 IPR013783 -
Lele40g0828 741 CDD FN3 351 425 IPR003961 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0828 Lele-ChrLele40 18744265 18748762 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0828 4 476 PHD Gene Family AT4G30200 54.851 2.29e-163 484