Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0823 ATGGAAGAAGAGAAATTAGTCGCACTTGATGCCATTATGAAGGAAGCTGTTGATCTGGAGAATATTCCTATTGACGAAGTGTTTCAACATCTCAAATGCACAAAGGAAGGTTTGAGCTCTGGAGAAGCAAAGCAGAGGCTTGGCTTGTTTGGATACAACAAGCTAGAAGAGAAGAAAGAAAGTAAAATCCTGAAATTTTTGGGGTTCATGTGGAATCCATTGTCTTGGGTAATGGAAGCTGCTGCTATTATGGCCATTGCTATGGCCCATGGAGGGGGCAAGCCTGGAGATTATCAAGATTTTGGTGGCATAGTCATGTTGCTTCTCATAAATTCTACCATAAGCTTCATGGAAGAAAACAATGCTGGAAATGCTGCTGCTGCGCTTATGGCTCGTTTGGCCCCAAAAGCTAAGGTACTGCGTGATGGAAAATGGAGTGAAGAAGATGCTTCAGTGTTGGTTCCTGGAGACATAATTAGCATCAAGCTTGGTGACATCATTCCTGCAGATGCTCGTCTCCTTCAAGGAGATCCTTTAAAAATTGACCAATCTGCTCTGACTGGAGAATCACTTCCAGTGACAAAAAATCCTGGAGATGGAGTATATTCTGGCTCAACTTGCAAGCAAGGAGAAATAGAAGCTCTAGTTATTGCCACCGGGGTCCACACTTTCTTTGGCAAAGCAGCTCATCTTGTGGAAAATACCACACATATAGGACACTTCCAGAAGGTTTTGACATCCATTGGGAACTTCTGCATTTGTTCGATCGCGGTTGGGATGCTTATCGAAATGATTGTGATATGGGGGGCTGACAAGAGAAGTTACCGAACCGGAATCGATAACCTCCTCGTGCTACTCATTGGTGGGATCCCAATTGCAATGCCAACTGTTCTTTCTGTCACAATGGCTATTGGTGCACACAAATTATCTCAGCAGGCATGTCAAGGTGCCATAACAAAGAGGATGACTGCCATTGAAGAAATGGCTGGCATGGATGTGCTATGCAGTGACAAAACAGGCACATTAACTCTTAACAAGCTCTCTGTGGACAAGAATTTGATTGAGGTTTTTCCCAAAGATGTTGACAAGGATATGGTTGTACTTATGGCTGCAAGAGCATCAAGAACAGAGAATCAAGATGCGATTGATGGTGCAATTGTTGCCATGTTATCTGATCCAAAAGAGGCAAGAGCTGGTATAACAGAAGTTCATTTTCTTCCATTCAATCCAACTGATAAAAGAACTGCACTTACATATATTGATGATGATGGTGAGATGCACAGAGTTAGTAAAGGTGCACCAGAACAGATTCTTAATCTTTCACATAACAGATCCGAAATTGCACAGAGGGTTCACACCATTATTGACAAGTTCGCAGAACGTGGACTACGGTCTCTTGCGGTAGCCCGGCAGGATGTAGCTGAAGGAACTAAAGAAAGTGCAGGAGGCCCCTGGGAATTTGTTGGCCTTCTTCCACTTTTCGATCCTCCTCGCCATGATAGCGGAGAAACAATCAAAAGAGCTCTGGATCTTGGAGTGAGTGTCAAAATGATAACAGGAGATCAACTTGCAATTGCTAAGGAAACAGGAAGGCGTCTAGGAATGGGTACTAACATGTATCCTTCTTCATCTCTTCTTGGTGAACACAAAGGTCAAACACTTGAGTCTCTCCCAATTGATGAGCTCATTGAGAATGCTGACGGATTTGCTGGTGTCTTTCCTGAGCACAAGTATGAGATTGTGAAGAGGTTACAAGCTAGAAAACACATTTGTGGGATGACTGGTGATGGTGTAAATGACGCTCCCGCCTTGAAGATAGCTGACATAGGTATAGCTGTAGCAGATGCCACCGATGCTGCTCGAAGCGCATCTGACATAGTTCTAACAGAACCTGGATTGAGTGTGATCATAAGTGCTGTTTTAACTAGCCGTGCCATCTTCCAAAGGATGAAAAACTACACGATATATGCTGTATCTATCACTATACGTATTGTGCTGGGCTTTATGTTATTGACCTGCTTTTGGAAATTTGACTTCCCTCCCTTCATGGTTCTTATAATAGCCATTCTCAATGATGGTACCATCATGACAATATCTAAAGATAGAGTTAAGCCTTCTCCAGCACCTGATAGTTGGAAGCTCAGTGAAATTTTTGCAACTGGGATTGTCCTTGGTAGCTATCTGGCTATAATGACTGTGATATTCTTCTGGGCAGCTTATGAAACTGACTTTTTCCATAACCATTTTCATGTGGAGAACTTCAATTCAAACCTTTACGACATGGCAAATAAAGATATCGCCAAGGCACTGAATGAGAAGATGGGATCTGCAGTGTATCTTCAAGTCAGCGTCATCAGTCAAGCGTTGATCTTTGTAACTCGCTCTCACGGATGGTCTTACACCGAACGACCTGGTCTTTTGCTCGTTATTGCTTTCATTATTGCTCAGCTGGTTGCAACAGTTTTATCTGCCACTGTGTCCTGGCATACAGCTGGAATAAAAAAAATAGGTTGGAAGTGGGCAGGAGTAATTTGGCTATACAACATTGTAACCTATGTATTGTTGGATCCTATAAAATTTGCTGTCCGTTATGCATTAAGTGGAAGGGCTTGGAATTTGGTCGTAAATCAAAGAACTGCATTCACAAACAAAAATGACTTTGGAAGAGAAGCTCGTGAGGCTGCATGGGCTGCTGAGCAAAGAACCCTCCATGGCCTTCAGTCTGCCACTGATTCAAAGATATTTGCAGAGAAGCACACATTCAGGGAAATCAACACACTAGCAGAAGAGGCTAAGAGAAGAGCTGAAATAGCAAGGATGAGAGAGCTTCACACTTTAAAAGGAAAAGTGGAATCATTTGCTAAGTTAAGGGGTTTGGACGTTGAAAATATTAACGGGCACTACACTGTCTAA 2913 0.4274 MEEEKLVALDAIMKEAVDLENIPIDEVFQHLKCTKEGLSSGEAKQRLGLFGYNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIAMAHGGGKPGDYQDFGGIVMLLLINSTISFMEENNAGNAAAALMARLAPKAKVLRDGKWSEEDASVLVPGDIISIKLGDIIPADARLLQGDPLKIDQSALTGESLPVTKNPGDGVYSGSTCKQGEIEALVIATGVHTFFGKAAHLVENTTHIGHFQKVLTSIGNFCICSIAVGMLIEMIVIWGADKRSYRTGIDNLLVLLIGGIPIAMPTVLSVTMAIGAHKLSQQACQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFPKDVDKDMVVLMAARASRTENQDAIDGAIVAMLSDPKEARAGITEVHFLPFNPTDKRTALTYIDDDGEMHRVSKGAPEQILNLSHNRSEIAQRVHTIIDKFAERGLRSLAVARQDVAEGTKESAGGPWEFVGLLPLFDPPRHDSGETIKRALDLGVSVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGEHKGQTLESLPIDELIENADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKIADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLTCFWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPAPDSWKLSEIFATGIVLGSYLAIMTVIFFWAAYETDFFHNHFHVENFNSNLYDMANKDIAKALNEKMGSAVYLQVSVISQALIFVTRSHGWSYTERPGLLLVIAFIIAQLVATVLSATVSWHTAGIKKIGWKWAGVIWLYNIVTYVLLDPIKFAVRYALSGRAWNLVVNQRTAFTNKNDFGREAREAAWAAEQRTLHGLQSATDSKIFAEKHTFREINTLAEEAKRRAEIARMRELHTLKGKVESFAKLRGLDVENINGHYTV 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0823 970 SMART Cation_ATPase_N_a_2 18 90 IPR004014 -
Lele40g0823 970 Gene3D - 135 219 - -
Lele40g0823 970 Pfam Cation transporter/ATPase, N-terminus 21 84 IPR004014 -
Lele40g0823 970 Pfam E1-E2 ATPase 133 311 - -
Lele40g0823 970 PANTHER CALCIUM-TRANSPORTING ATPASE 20 902 - -
Lele40g0823 970 SFLD p-type atpase 317 645 IPR044492 -
Lele40g0823 970 CDD P-type_ATPase_H 37 860 IPR006534 GO:0008553|GO:0016020|GO:0120029
Lele40g0823 970 ProSitePatterns E1-E2 ATPases phosphorylation site. 337 343 IPR018303 -
Lele40g0823 970 FunFam Plasma membrane ATPase 487 642 - -
Lele40g0823 970 PRINTS H+-transporting ATPase (proton pump) signature 451 469 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele40g0823 970 PRINTS H+-transporting ATPase (proton pump) signature 594 610 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele40g0823 970 PRINTS H+-transporting ATPase (proton pump) signature 566 582 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele40g0823 970 PRINTS H+-transporting ATPase (proton pump) signature 779 800 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele40g0823 970 PRINTS H+-transporting ATPase (proton pump) signature 625 650 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele40g0823 970 Gene3D - 97 833 - -
Lele40g0823 970 SUPERFAMILY Calcium ATPase, transmembrane domain M 18 866 IPR023298 -
Lele40g0823 970 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 104 354 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele40g0823 970 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 569 674 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele40g0823 970 FunFam Plasma membrane ATPase 347 494 - -
Lele40g0823 970 SUPERFAMILY Calcium ATPase, transduction domain A 135 232 IPR008250 -
Lele40g0823 970 Gene3D - 347 494 IPR023299 GO:0000166
Lele40g0823 970 PRINTS P-type cation-transporting ATPase superfamily signature 335 349 - -
Lele40g0823 970 PRINTS P-type cation-transporting ATPase superfamily signature 511 521 - -
Lele40g0823 970 PRINTS P-type cation-transporting ATPase superfamily signature 489 500 - -
Lele40g0823 970 PRINTS P-type cation-transporting ATPase superfamily signature 182 196 - -
Lele40g0823 970 PRINTS P-type cation-transporting ATPase superfamily signature 617 629 - -
Lele40g0823 970 PRINTS P-type cation-transporting ATPase superfamily signature 594 613 - -
Lele40g0823 970 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 37 824 IPR006534 GO:0008553|GO:0016020|GO:0120029
Lele40g0823 970 SUPERFAMILY HAD-like 331 641 IPR036412 -
Lele40g0823 970 FunFam ATPase 4 plasma membrane-type 578 834 - -
Lele40g0823 970 Gene3D - 919 970 - -
Lele40g0823 970 Pfam haloacid dehalogenase-like hydrolase 331 608 - -
Lele40g0823 970 Gene3D - 332 631 IPR023214 -
Lele40g0823 970 SFLD Haloacid Dehalogenase 317 645 - -
Lele40g0823 970 FunFam Plasma membrane ATPase 135 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0823 Lele-ChrLele40 18657343 18666205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0823 8 970 Primary Pumps ATPases AT3G60330 78.423 0.0 1539