Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0820 ATGAACCCTAATAATCTTTCTCCTTTAGATTCAGTTCAGCAATACCTTCTTCAAGATGATCCTTCCTCTATGATTCTCATGAATGTCTTCTTCATGCGGAATAATAACAACCCTACTTTTAACCCTAGCTGCGGCCTTTCTTCGCCGGAGCAGGGTGCTAGTAACTCCAGTGGCATGGCTTTTTCTGGCGGTGACCATGACAGCACAGCGAAACCTCCTGGAGGTGATGACGATAGGTTTAATGATGCTAACAGCAATGCAGGCGGGTCTGTGGCGCGTGAAAGGAACGCGCCGCCAAGATGGAGGACCTACCGAGGTGTGAGGCGGCGGCCATGGGGGAAGTTCGCGGCTGAGATCCGGGACCCAAAGAAGAACGGGGCGAGGATATGGTTGGGAACTTATGAGAGGGAGGAGGATGCAGCTTTGGCTTATGATAGAGCTGCTTTCAAGATGCGTGGTAGAAAAGCCAAGCTCAATTTTCCACACCTCATTGGGTCGGAACCACAACCAGAGCCCACGAGAGTAGTGGCTGGACAGAAGCGTCGGCGCTCACCGGAACCATCATCGCCATCTGAGGATGATGGATCACAGGGGTCAAGTAATAAGAGGAAGAACTTGGCTGGTCTATTGAATAGGTTAGCAACAAATGGGAATCTAAGCCACAAGCTTGAAATGGTATTCATGAAGGCATAG 693 0.5022 MNPNNLSPLDSVQQYLLQDDPSSMILMNVFFMRNNNNPTFNPSCGLSSPEQGASNSSGMAFSGGDHDSTAKPPGGDDDRFNDANSNAGGSVARERNAPPRWRTYRGVRRRPWGKFAAEIRDPKKNGARIWLGTYEREEDAALAYDRAAFKMRGRKAKLNFPHLIGSEPQPEPTRVVAGQKRRRSPEPSSPSEDDGSQGSSNKRKNLAGLLNRLATNGNLSHKLEMVFMKA 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0820 230 MobiDBLite consensus disorder prediction 41 63 - -
Lele40g0820 230 ProSiteProfiles AP2/ERF domain profile. 103 161 IPR001471 GO:0003700|GO:0006355
Lele40g0820 230 SUPERFAMILY DNA-binding domain 103 162 IPR016177 GO:0003677
Lele40g0820 230 MobiDBLite consensus disorder prediction 190 205 - -
Lele40g0820 230 MobiDBLite consensus disorder prediction 41 97 - -
Lele40g0820 230 MobiDBLite consensus disorder prediction 161 205 - -
Lele40g0820 230 FunFam Ethylene-responsive transcription factor 2 102 162 - -
Lele40g0820 230 Pfam AP2 domain 104 153 IPR001471 GO:0003700|GO:0006355
Lele40g0820 230 PANTHER DNA-BINDING DOMAIN 72 196 IPR044808 GO:0003700|GO:0009873
Lele40g0820 230 CDD AP2 104 163 IPR001471 GO:0003700|GO:0006355
Lele40g0820 230 SMART rav1_2 103 167 IPR001471 GO:0003700|GO:0006355
Lele40g0820 230 Gene3D AP2/ERF domain 103 162 IPR036955 GO:0003700|GO:0006355
Lele40g0820 230 PRINTS Ethylene responsive element binding protein signature 104 115 IPR001471 GO:0003700|GO:0006355
Lele40g0820 230 PRINTS Ethylene responsive element binding protein signature 143 163 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0820 Lele-ChrLele40 18640363 18641055 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0820 104 188 AP2-EREBP Transcription Factor Family AT2G44840 78.824 9.88e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele40g0820 AP2 2.3e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele40g0820 40 18640363 18641055 Lele40g0820 40 18640363 18641055 ECH
Lele37g0934 37 19206839 19207432 Lele40g0820 40 18640363 18641055 hybridization
Lele38g0861 38 20292702 20293394 Lele40g0820 40 18640363 18641055 hybridization