LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele40g0819	ATGCATAAGCCATGTTTCACTGATCCCGTGTGCTTTACCAAAATGATGAACCCTAATTTCGAATCAATTCAACAATACCTGATTGAAGAAGATCCTTCTTCCATGACTCTCTTGAATGGCTTCTTCATCGCAGACAATCCTACTTTGAATCTGAACTTTGTCGACGCTGCTTTGCCGGAGCAGGGTGTTAGTAACTCCAGTGGTACGGTGTTTTCCGGCTTGAATGATGACAAATACGCTATGAATCCAGGCGGTTGTTATGATGATAGGGTTAATGGTAATAACAACACAGGATCTGTGGTGGCGTGTGAAAAGAACGCACCACCAAGATGGAGGAATTACCGAGGCGTGAGGCGGCGGCCATGGGGGAAGTTTGCGGCTGAAATTCGGGACCCGAACAGGAATGGCGCGAGGACATGGCTGGGAACCTATGAAACGGAGGAGGATGCAGCTTTGGCTTATGATAGAGCTGCTTTCAAGATGAAAGGTAGAAAAGCCAAGCTCAATTTTCCACACCTCATTGGATCTGAACCACTGCCAGAGCTGACAAGAGTAGTTGCCGGACAGAAGCGGCGGCGCCCTCTGGAAGAAAAGCCACCGGCTGGTCTACCGAATAAGTTAGAAATGGCGTGA	633	0.4834	MHKPCFTDPVCFTKMMNPNFESIQQYLIEEDPSSMTLLNGFFIADNPTLNLNFVDAALPEQGVSNSSGTVFSGLNDDKYAMNPGGCYDDRVNGNNNTGSVVACEKNAPPRWRNYRGVRRRPWGKFAAEIRDPNRNGARTWLGTYETEEDAALAYDRAAFKMKGRKAKLNFPHLIGSEPLPELTRVVAGQKRRRPLEEKPPAGLPNKLEMA	210

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele40g0819	210	PANTHER	DNA-BINDING DOMAIN	96	183	IPR044808	GO:0003700\|GO:0009873
	Lele40g0819	210	SUPERFAMILY	DNA-binding domain	113	172	IPR016177	GO:0003677
	Lele40g0819	210	CDD	AP2	113	173	IPR001471	GO:0003700\|GO:0006355
	Lele40g0819	210	Gene3D	AP2/ERF domain	112	172	IPR036955	GO:0003700\|GO:0006355
	Lele40g0819	210	Pfam	AP2 domain	113	163	IPR001471	GO:0003700\|GO:0006355
	Lele40g0819	210	PRINTS	Ethylene responsive element binding protein signature	153	173	IPR001471	GO:0003700\|GO:0006355
	Lele40g0819	210	PRINTS	Ethylene responsive element binding protein signature	114	125	IPR001471	GO:0003700\|GO:0006355
	Lele40g0819	210	SMART	rav1_2	113	177	IPR001471	GO:0003700\|GO:0006355
	Lele40g0819	210	MobiDBLite	consensus disorder prediction	187	210	-	-
	Lele40g0819	210	FunFam	Ethylene-responsive transcription factor 2	112	172	-	-
	Lele40g0819	210	ProSiteProfiles	AP2/ERF domain profile.	113	171	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele40g0819	Lele-ChrLele40	18635456	18636088	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele40g0819	113	176	AP2-EREBP Transcription Factor Family	AT2G44840	84.375	4.31e-35	122

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele40g0819		AP2	6.1e-14	CL0081