LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele40g0818	ATGATCCCTAACAACAATCTTTCTTCTTTCAAATCATCATCAGTTCAGCAGTACGATCATGATCCTTCTTCATCAACGACCACTCTCATGGTGATGAATACTGTCTTCTTCACTACTTCAAACCCTAACTGCGACACTGCTTCTTCGCTTGAGCAGTCTCTGAGTAACTCCAGTGGCACGGCATTTTCCGGTGAGCATGAAGATCACACCATGAAAGCAGGTGGTGGTGATAGGGCTAATAACAATAATCTTAGTAATGTGGAATCTGAATCTGTTGGGCGTGAGGTGAACGCGCCACCTAGATGGAGGAATTACCGGGGCGTGAGGCGTCGCCCATGGGGGAAGTTCGCGGCCGAGATCCGGGACCCGAGGAGGAACGGCGCGAGAACTTGGTTGGGGACATATGAGACTGAGGAGGATGCAGCTTTGGCTTATGATAGAGCTGCTTTCAAGATGAGGGGAAGAAAAGCCAAGCTCAATTTTCCACACCTTATTGGGTCGGAATCGGACCCACCGCCGGAGCCGGTTGACAAGAAGCGGTGCCACTCGCCAGAACCTTCATCGCCGACAGGTTGTGCATCTGAGGATAGTGGATCTCAAGGGTCAAGTAAGAAGAAGAACCTCACTAGTCTATTGAACAAGTTAGCAACAAATAGAAGCCAAGTCAGAAGCTTGAAATAA	681	0.4905	MIPNNNLSSFKSSSVQQYDHDPSSSTTTLMVMNTVFFTTSNPNCDTASSLEQSLSNSSGTAFSGEHEDHTMKAGGGDRANNNNLSNVESESVGREVNAPPRWRNYRGVRRRPWGKFAAEIRDPRRNGARTWLGTYETEEDAALAYDRAAFKMRGRKAKLNFPHLIGSESDPPPEPVDKKRCHSPEPSSPTGCASEDSGSQGSSKKKNLTSLLNKLATNRSQVRSLK	226

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele40g0818	226	Pfam	AP2 domain	104	154	IPR001471	GO:0003700\|GO:0006355
	Lele40g0818	226	SMART	rav1_2	104	168	IPR001471	GO:0003700\|GO:0006355
	Lele40g0818	226	MobiDBLite	consensus disorder prediction	162	226	-	-
	Lele40g0818	226	MobiDBLite	consensus disorder prediction	47	95	-	-
	Lele40g0818	226	PRINTS	Ethylene responsive element binding protein signature	105	116	IPR001471	GO:0003700\|GO:0006355
	Lele40g0818	226	PRINTS	Ethylene responsive element binding protein signature	144	164	IPR001471	GO:0003700\|GO:0006355
	Lele40g0818	226	FunFam	Ethylene-responsive transcription factor 2	103	163	-	-
	Lele40g0818	226	CDD	AP2	104	164	IPR001471	GO:0003700\|GO:0006355
	Lele40g0818	226	MobiDBLite	consensus disorder prediction	76	92	-	-
	Lele40g0818	226	MobiDBLite	consensus disorder prediction	1	24	-	-
	Lele40g0818	226	MobiDBLite	consensus disorder prediction	47	64	-	-
	Lele40g0818	226	Gene3D	AP2/ERF domain	103	163	IPR036955	GO:0003700\|GO:0006355
	Lele40g0818	226	PANTHER	DNA-BINDING DOMAIN	58	205	IPR044808	GO:0003700\|GO:0009873
	Lele40g0818	226	SUPERFAMILY	DNA-binding domain	104	163	IPR016177	GO:0003677
	Lele40g0818	226	MobiDBLite	consensus disorder prediction	187	226	-	-
	Lele40g0818	226	ProSiteProfiles	AP2/ERF domain profile.	104	162	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele40g0818	Lele-ChrLele40	18629107	18629787	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele40g0818	105	195	AP2-EREBP Transcription Factor Family	AT2G44840	71.739	2.01e-38	131

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele40g0818		AP2	4.4e-14	CL0081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele40g0818	40	18629107	18629787	Lele40g0818	40	18629107	18629787	ECH
	Lele37g0930	37	19174770	19175354	Lele40g0818	40	18629107	18629787	hybridization
	Lele38g0859	38	20280664	20281341	Lele40g0818	40	18629107	18629787	hybridization