Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0813 ATGGCCGACTTGCCGCTATACACTCCGGCAACACTCTCCGACAACATCCCCATGCACGGCCAGAGCTCAGTGTATGACGATACTCATTACATCAATGAAGTAGTTCCAGAAGTTTGCACCATTGATGATAACAATAATATCCAAATAGAAGATGCAGTAGTGGCGCGTGAAGATCCGGCTAAAAATGGTGCTAGGGTTTGGCTTCGGACTTATGATACCGCCGAGGATGCAGCTATAGCTTATGACCGAGCGGCTTATGAGATGCGCGGAGCTAAAGCTAAGCTTAATTTTCCTCACCTTGTGGGCTCGAATGTGTGGGAGTCAGCTCGAGCCACTCGGAAGCGGTACGACCTCACCATGGCCGGCGGCGGGGAGAAGTGA 381 0.5118 MADLPLYTPATLSDNIPMHGQSSVYDDTHYINEVVPEVCTIDDNNNIQIEDAVVAREDPAKNGARVWLRTYDTAEDAAIAYDRAAYEMRGAKAKLNFPHLVGSNVWESARATRKRYDLTMAGGGEK 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0813 126 Gene3D AP2/ERF domain 43 100 IPR036955 GO:0003700|GO:0006355
Lele40g0813 126 SMART rav1_2 53 104 IPR001471 GO:0003700|GO:0006355
Lele40g0813 126 PANTHER DNA-BINDING DOMAIN 58 106 IPR044808 GO:0003700|GO:0009873
Lele40g0813 126 CDD AP2 61 100 IPR001471 GO:0003700|GO:0006355
Lele40g0813 126 ProSiteProfiles AP2/ERF domain profile. 58 98 IPR001471 GO:0003700|GO:0006355
Lele40g0813 126 SUPERFAMILY DNA-binding domain 58 99 IPR016177 GO:0003677
Lele40g0813 126 Pfam AP2 domain 56 90 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0813 Lele-ChrLele40 18612738 18613200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0813 58 115 AP2-EREBP Transcription Factor Family AT2G44840 67.241 1.93e-23 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele40g0813 AP2 1.6e-06 CL0081