Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0754 ATGAGCAATTCGAGCAAGGCATGCCACCTCCTCAGGCATTTACTTTTATTTCCTCTTCCCAAATTCATTTCCACGCCTTCCCACCAACTTCACCTTCATCTTCATCCCTCACGTGCTCCTCACGTGCTCCCCGCCCTCCATTTATATACCCCCGTCTTTCTCATTTCCCTCCTCTTCTCTCTCTCTGTTAAGTTTCTCTCTCCCCCCTCTCTCTCGTTCGCCATGGCTTCTCCGCCTTCTTACACCCTAAACGTCGTCGGGTCATATCCTACCTCCTTCACCGAGACTTCTACTTCTGAGGATCGTGCTTCTTCTCAGCACTTCTCTGCTTTTCAGAATCTCAACACCAGTGTTCTCATTATTGTTATCGTCCTTTCTGTTACTATCATTGTGTCGCTCTCTCTCTGCTTGCTTCTTCGTCATCTCAATCTCCAGTGCCTCCGTCGGGTTTCTCCTTCGTCGTTGTTGTCGTCGTTCAGGAGGAATGCCACGCCGGCGACTGCGACTGCTAGTACGACGCCTGGTTACTCTTCCAGTAGTCGCGTCTCGCCGGAGATTCCCTCGGCTTCAATTATTGATTCGCTTCCGATGTTCACTTTTTCTTCCATTACTCGTCGCTCTTCTGCCTCTGATACTACCGGCGGAGATTGTGCAGTTTGCCTCTCGAAATTTGAGCAGAGAGACCTCCTCCGTCTTCTCCCGTTGTGTTGTCATGCCTTTCATGTGGAATGCATCGATACTTGGCTTCAGGCGAATTTGACTTGTCCGTTGTGTCGATCTGCGATTTTTGCTTCTGATTCAGACTTAATGAAGGTTCTCCGATCCTCTTCCGGCGGGGGTGGAGGCAGCGATAGTTTCCGGCTCGAAATTGGAAACATTAGCCGGCGGGGAACGGCGCCACCAGACGTCGCTGGAGACGTGCGTGCGAGGTCGAGGTCGAGGTCGAGGTCCTATTCGGTTGGCTCCTTTGAGTATTTTGTAGAGGAGGATTCCGAGGTTCCTATGAGCCACGCGCATCGGAGGAGCGTGTCGGATAACAAGGATGAATCGGTAGTTGCAGACTCTCCACCACCGGCGGCGGCTCAGTCGGTCTATGAGGCGAGCTTAGCCGCCGATGTAGCCAGCAGTGGGAGGAGCTGGCTGAAGGATTACGTGGATAGGCTCTCATCTTCTATATCATCCCGAACAGTATCATTTCGAGGTTCTGGAAGGTTCTTTACCGGCGGTAATGCTAGCCAACGAAGCGACGCCGCCGTCTCAGCGGAGGACTGCGACATTGAAGCAATCAGATTAGGCGAAGAAATTAGCGAAACTTTTCGATGGCTCTCAGGGGTATGA 1338 0.5202 MSNSSKACHLLRHLLLFPLPKFISTPSHQLHLHLHPSRAPHVLPALHLYTPVFLISLLFSLSVKFLSPPSLSFAMASPPSYTLNVVGSYPTSFTETSTSEDRASSQHFSAFQNLNTSVLIIVIVLSVTIIVSLSLCLLLRHLNLQCLRRVSPSSLLSSFRRNATPATATASTTPGYSSSSRVSPEIPSASIIDSLPMFTFSSITRRSSASDTTGGDCAVCLSKFEQRDLLRLLPLCCHAFHVECIDTWLQANLTCPLCRSAIFASDSDLMKVLRSSSGGGGGSDSFRLEIGNISRRGTAPPDVAGDVRARSRSRSRSYSVGSFEYFVEEDSEVPMSHAHRRSVSDNKDESVVADSPPPAAAQSVYEASLAADVASSGRSWLKDYVDRLSSSISSRTVSFRGSGRFFTGGNASQRSDAAVSAEDCDIEAIRLGEEISETFRWLSGV 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0754 445 FunFam E3 ubiquitin-protein ligase ATL6 177 265 - -
Lele40g0754 445 SMART ring_2 217 258 IPR001841 -
Lele40g0754 445 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 113 338 - -
Lele40g0754 445 MobiDBLite consensus disorder prediction 336 358 - -
Lele40g0754 445 SUPERFAMILY RING/U-box 192 265 - -
Lele40g0754 445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 263 IPR013083 -
Lele40g0754 445 CDD RING-H2_PA-TM-RING 216 259 - -
Lele40g0754 445 ProSiteProfiles Zinc finger RING-type profile. 217 259 IPR001841 -
Lele40g0754 445 Pfam Ring finger domain 216 259 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0754 Lele-ChrLele40 17787782 17790020 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0754 190 266 C3H Transcription Factor Family AT5G05810 51.948 2.56e-20 90.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0878 37 18584404 18585492 Lele40g0754 40 17787782 17790020 hybridization
Lele38g0811 38 19793088 19795205 Lele40g0754 40 17787782 17790020 hybridization