Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0712 ATGCCTCCAAGGAAGAAACCCAGCTCTACTTCCAAGAAATCGAATCCAAGCAGCCAGGCTCAACATTCCAAGTTCTGTATTCAACATTTTTTTGAGCGCCACACCCAGAATGCTCTTCTGGCCTCTCAGAAGCAGCCTAAAAATGATGCACCTGCTAACCGTCCTGTTTCTGTTGCCCAAGATTCCAACTCCGTTGCACCTCCTAACTCTCATATTCCATGTGTTACTGAATCGCAAGCTGTTGCTCCAAACAATTTAGATTCCGTTCTTCCCAGAGCTGAATATAATTTGAACTCAGACTTGGATTGGCCAAAAAGGGGGAATTCAGAATTGCAAAAGCTTAAAGACATCCCACCAGTAGGAGCAAATGAATCCAATAACGTGTTGCAGAATACTCCTTCAGAGAATTTGCTAATACCAGGGATTGATGCAGTGGATAATCTTCCTGAAGAGTCTCCGGAAATTTCTAAGATTGTGCCCCATAAGCGCTCCAAGTTCTCGCCTGGGATGTTCATAAAACAGAGCCAAGATGATGGGGTTGATGAAGTTATATGGAAGATATCTCCTGTGAATGAAAGACTTCAAAGACTTCAAGCAGTTTCAAAACACATGCCTCAGATAATTCAAGTTTTGTCTGAATCTTCTAGAATCAACTTATTGCCCGTTGGGATTTCCTCAGAGAATCAGACTTCTCTGACTAAAGGTGGTAAATTTGGAAAGTTAATTACTTCAACAGCTACAAAGGCTGCTGAGAGGTCAACAGTGTCTAAGAATGAAAAAGGCTTGAAACGTATAAACCCAGACCAAGACATGGTTTTTAATGTCAGTTCAACTACTGTGAATGATTCTGGAGTAATTACTTCACAGAGCCCCTTCAGAACTCCGCCATCCTTATCCTATTGCTCTGATAAGGCATTGCTTGAACTGTTAGACCAAGTCGAAGATGCCATATGTGTTGAAGATGCTAAAATTAGTGATAAAAGTGCAAATTACATTAAGTCTCAAGATGGAATTGTTGATAATCTGCCCATCAGAGTTGACTGTGCAGCAGAAAGCACTATAGTTCATACACCTAAAGAGGCCATCGGTGTGTCCAATTCTAATTATTTGGTGTTGGAGGTGTCTGAAAAACATAGGCTGGCTAATTCATCTTCTTTGCAAGGCCAATACAAGGTGCTTCGCTTAATAAATGAACAAACTGGAGAAGAGAAGGCTGTAAAGTTGTTGGAAGAGTGGTCTTACAGTGTTGTTGCACCTGGAGATACTGTGAATATAATTGGTCAATTTGATGATCAGGGGCATTGTGATGTAGATCATGATAATAATTTTTTGATTGTACACCCAGATATTCTGGTGTCTGGATCTCGGGTAGCTGCTAGTTTTACTTGTCCAAGGAGAACTGTCTTAGATGAGAGGCTAAAATATAATGAGTACTCAATTGCTGCATTAACTGGAACCTTACTTCACCAAATTTTTCAGGCTGGACTCGTCAAGGATAGTCCTACTATAAACTTCTTAGAGGAATATGCACGATTGGTACTCCAGAGAAACATTGAAAGCTTGTATGCATGTGGAGTAAATGAAAATGATGTACACAAAACCTTGATAGATGCAATCCCACGAATGTTAAATTGGATCAAACTGTTCAAGAATTCAGAGGAAAAGAAAGATGCTTATGTTGATTTTGGATGTGAGGATGGTATAAAGAAAGTCGAAATATCTGAGGTGATTGATATTGAGGAGATGGCATGGGCTCCTAAATATGGTTTGAAAGGGATGATTGATGCTTCTGTCACTGTGAAAGTTCTACCAAAGGGAAATGAAGCAGATGGGAAGGTCATGCCACTAGAGTTCAAAACTGGGAAAGCAAAGTCTGGACAGTCATATATAGAACACCGTGCTCAAGTGATCTTATACACTCTTCTGATGTCTGAAAGGTACCTGAAGACTATTGATTCTGGTCTTCTATATTATCTCCAGTCAGATCAGACAGAGGGCATTGTAGTTCAAAGATCTGACTTAGTTGGTCTAATCATGCGACGTAATGAGCTTGCAAGTGATATTCTGAAGGCATTAACCACACAACAACTGCCTCCAATGTTACAGAGTCCAAGCATTTGCAGAGGTTGTCGCCATCTTAATGTTTGTAGCATTTTTCATAAGGTTCAAGGAGGAAGTGCAGAGAGTAGTGGATTGGGAGATGTGTTTGATTCACATACTAATCACATTTCATCTACTTATTGTAAGTTCCTCTTCCATTGGGATCGGCTGATTGACTTGGAAGCAAAACAGACTGAGCTTGTGAGGAAAGAGATGTGGCGATCACATACTTTTAAAAGTCAGAACAGTACTGGCCTTTCTTCTGTCATCCTTGATGCTTCAAATAAGATTACGTCTCAGAAATCTCTTAAAGATAATTGTTTCATTTATCGTTTTGTACGATGTGATCTATCTTCTCTATCTGAAGTGTCTGATGGTGATACTTCTAATGCTTCAACAAATTATTTAGATCTCAAACTAAGAACTGGAAACTATGTGATATTGAGCTCGGAATCTAGCCATCAAGCTATTGCTAGTGGGGTGATTACAGATATTAGTCATGCCCATGTTTCTGTTTCCTTTTCAAAGCGCCTGAGGATTCCTGGAAGCACCTCCACTTGCCAAGATCTCTATAAACAGGTTTGGAGAATTGATAAGGATGAAGCTGTGACTTCATTTGCTATTATGAGGTTTAATCTAGTACAACTTTTTCTGCAAAATGCTCAAAGTACTCATCTGAGGAAAATGATTGTTGATCTTGAGGCTCCTAAATTTGACAGCGGGTCTATGGTCAGTCAGGACCCAGCAATATCATATGTGTGGTCAGAGAAGAGTTTGAACGATGATCAGCGTAGATCAATCCTCAAGATTCTTACGGCAAAGGATTACGCTCTCATACTAGGAATGCCTGGAACAGGAAAGACATCGACCATGGTTCATGCTGTGAAAGCATTATTAATCAGAGGCACATCTATTTTGCTGACAGCCTATACAAACTCAGCTGTAGATAATTTACTCATCAAATTAAAAGCTCAGGGAATTGATTTTGTACGTATTGGAAGACGTGAAGCTGTGCATGAGGAGGTTAGAGAACACTGCCTTTCAGCAACGAATGCACAAAATGTTGATGAGATCAAAGTAAGGTTAGAACAAGTTAAAGTAGTTGCAGTTACATGTCTGGGCATCCCCAGTCCCTTGCTTGCCAACAGGACTTTTGATGTATGCATTATGGATGAAGCTGGACAGACAACTCTACCAGTGTCCTTGGGCCCCCTCATGTTTTCTTCAATGTTTGTACTTGTGGGTGATCACTATCAACTTCCTCCACTTGTTCAGAGCGCAGAGGCTCGAGAGAATGGTATGGGGATAAGTTTATTTTGTAGGCTCTCAGAAGCACATCCACAAGCAATTTCAGCACTACAGAGTCAGTACCGTATGTGTCAGGGCATTATGGACCTGTCAAATGTCTTGATATATGGTGATAGGTTAAGGTGCGGTTCCACTGAGATTGCTAATGCAAAACTTGAGTTTTCTACCTTAAAATGTGGCTTACCTTGGCTAAAAAATGTTTTGAATCCAGGCAGGCCAGTGATATTTATTGATACTGATAAATTGCCTGCATTTGAGGCGAGAGAACAGACTATAAATAACCCTGTAGAAGCTCACATAATTGTTGAGATAGCAAAGGCATTAATAAAAAATGGAATTGGTGAAGAACATGTTGGCATTATTACACCCTACAATTCCCAGGCAAACCTCATCCGTCAGGCTGCTTGTATGACCTCGTTGGAGATTCATACCATTGATAAATACCAGGGTAGAGATAAAGATTGTATATTAATATCCTTTGTGAGGTCTAGTGAAAATCCATCAAGCTGTGCTTCTTCTCTGCTTGGAGACTGGCACAGGATAAATGTGGCTCTCACACGTGGCAAGAAAAAGCTGATAATGGTGGGATCTTGTAGAACTCTATCAAAGGTTCCATTACTGAAGCTTCTCATAAAAAAGGTTGAGCAGCAATCAGGTATTGTTAGTGTGTCTAAGAAGTATATCTATCAGAAAGGAGAGCTCAAAAGGTGTTCCCAGTACATGATGAGATGA 4140 0.4027 MPPRKKPSSTSKKSNPSSQAQHSKFCIQHFFERHTQNALLASQKQPKNDAPANRPVSVAQDSNSVAPPNSHIPCVTESQAVAPNNLDSVLPRAEYNLNSDLDWPKRGNSELQKLKDIPPVGANESNNVLQNTPSENLLIPGIDAVDNLPEESPEISKIVPHKRSKFSPGMFIKQSQDDGVDEVIWKISPVNERLQRLQAVSKHMPQIIQVLSESSRINLLPVGISSENQTSLTKGGKFGKLITSTATKAAERSTVSKNEKGLKRINPDQDMVFNVSSTTVNDSGVITSQSPFRTPPSLSYCSDKALLELLDQVEDAICVEDAKISDKSANYIKSQDGIVDNLPIRVDCAAESTIVHTPKEAIGVSNSNYLVLEVSEKHRLANSSSLQGQYKVLRLINEQTGEEKAVKLLEEWSYSVVAPGDTVNIIGQFDDQGHCDVDHDNNFLIVHPDILVSGSRVAASFTCPRRTVLDERLKYNEYSIAALTGTLLHQIFQAGLVKDSPTINFLEEYARLVLQRNIESLYACGVNENDVHKTLIDAIPRMLNWIKLFKNSEEKKDAYVDFGCEDGIKKVEISEVIDIEEMAWAPKYGLKGMIDASVTVKVLPKGNEADGKVMPLEFKTGKAKSGQSYIEHRAQVILYTLLMSERYLKTIDSGLLYYLQSDQTEGIVVQRSDLVGLIMRRNELASDILKALTTQQLPPMLQSPSICRGCRHLNVCSIFHKVQGGSAESSGLGDVFDSHTNHISSTYCKFLFHWDRLIDLEAKQTELVRKEMWRSHTFKSQNSTGLSSVILDASNKITSQKSLKDNCFIYRFVRCDLSSLSEVSDGDTSNASTNYLDLKLRTGNYVILSSESSHQAIASGVITDISHAHVSVSFSKRLRIPGSTSTCQDLYKQVWRIDKDEAVTSFAIMRFNLVQLFLQNAQSTHLRKMIVDLEAPKFDSGSMVSQDPAISYVWSEKSLNDDQRRSILKILTAKDYALILGMPGTGKTSTMVHAVKALLIRGTSILLTAYTNSAVDNLLIKLKAQGIDFVRIGRREAVHEEVREHCLSATNAQNVDEIKVRLEQVKVVAVTCLGIPSPLLANRTFDVCIMDEAGQTTLPVSLGPLMFSSMFVLVGDHYQLPPLVQSAEARENGMGISLFCRLSEAHPQAISALQSQYRMCQGIMDLSNVLIYGDRLRCGSTEIANAKLEFSTLKCGLPWLKNVLNPGRPVIFIDTDKLPAFEAREQTINNPVEAHIIVEIAKALIKNGIGEEHVGIITPYNSQANLIRQAACMTSLEIHTIDKYQGRDKDCILISFVRSSENPSSCASSLLGDWHRINVALTRGKKKLIMVGSCRTLSKVPLLKLLIKKVEQQSGIVSVSKKYIYQKGELKRCSQYMMR 1379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0712 1379 CDD SF1_C_Upf1 1159 1351 IPR041679 -
Lele40g0712 1379 MobiDBLite consensus disorder prediction 7 25 - -
Lele40g0712 1379 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 901 1050 - -
Lele40g0712 1379 Gene3D - 1157 1368 IPR027417 -
Lele40g0712 1379 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 1055 1156 - -
Lele40g0712 1379 MobiDBLite consensus disorder prediction 42 71 - -
Lele40g0712 1379 FunFam DNA replication helicase 1157 1369 - -
Lele40g0712 1379 MobiDBLite consensus disorder prediction 1 25 - -
Lele40g0712 1379 PANTHER DNA2/NAM7 HELICASE FAMILY 5 1355 IPR045055 -
Lele40g0712 1379 Pfam AAA domain 1136 1334 IPR041679 -
Lele40g0712 1379 Pfam AAA domain 959 1053 IPR041677 GO:0004386
Lele40g0712 1379 Pfam AAA domain 1061 1126 IPR041677 GO:0004386
Lele40g0712 1379 Gene3D - 453 717 IPR011604 -
Lele40g0712 1379 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 958 1343 IPR027417 -
Lele40g0712 1379 Gene3D - 883 1156 IPR027417 -
Lele40g0712 1379 Pfam Domain of unknown function DUF83 609 717 IPR022765 -
Lele40g0712 1379 CDD DEXXQc_DNA2 958 1158 - -
Lele40g0712 1379 FunFam DNA replication helicase Dna2 563 717 - -
Lele40g0712 1379 Pfam DNA replication factor Dna2 398 599 IPR014808 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0712 Lele-ChrLele40 17082071 17099988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0712 1 1100 Core DNA Replication Machinery Family AT1G08840 53.609 0.0 1103