Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0684 ATGAAACGGGAAGTGCAGCTAGAGCCGCCAGTTACACAAAAGCTTGGGGATTCCGACCCTCTACTCGGTAATCAGGAGGAGGAGGAGGAGGAAGAGCGGGAGGAGGAGGAGTGCCCAGGAGGCACGAGTGAAATTAGGAGTGAAGATGTCGAGGCTGGTTTACTTCCTTCTTGTCGAATATGCCTGGAAAGCGATTCCGACCCAGGTGATGAATTGATATCACCGTGCATGTGCAAGGGGACCCAGCAGTTTGTCCATCGTTCATGTCTTGATCACTGGCGCTCAGTAAAGGAAGGGTTTGCCTTCTCACACTGCACCACTTGCAAAGCCCAATTCCATCTTCGAGTTGAATCGTTTGAGGACAACTCCTGGCGTAAAATAAAGTTCAGGTTTTTTGTGGCAAGGGATGTTTTTCTTGTATTTTTGGCCGTACAAACTGTTATTGCGGCTATGGGTGCCTTTGCATACCTTATGGACAAAGATGGGGCATTCAGGAACTCTTTCGATGATGGTTGGGATCGGATACTGTCAAACCATCCTATACCATTTTATTATACTATTGGAGTGCTAGCCTTCTTTGTGCTGCTTGGATTTTTTGGTCTCATTCTACATTGTTCCTCCCTCAATGCCAATGACTCCAGAATGGCTGGGTGTCAGAACTGTTGTTATGGATGGGGCATTTTGGATTGCTTTCCGGCATCAATGGAAGCATGCTTTGCCCTTGTGGTTGTTTTCGTCGTCATCTTTGCAATTTTGGGTATAGCTTATAGTTTCCTGGCAGCCACCATGGCAATTCAAAGAATTTGGCAGAGACACTACCACATACTGACCAAGAGGGAGCTAACTCAGGAATATGTTGTTGAGGATCTCCAAGGTTCTTATTCCCCACCAAAATTGGACCCAGAACATGAAGAGCGCTTGAAAATGCTCAAGCTTTTGTGA 942 0.465 MKREVQLEPPVTQKLGDSDPLLGNQEEEEEEEREEEECPGGTSEIRSEDVEAGLLPSCRICLESDSDPGDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVESFEDNSWRKIKFRFFVARDVFLVFLAVQTVIAAMGAFAYLMDKDGAFRNSFDDGWDRILSNHPIPFYYTIGVLAFFVLLGFFGLILHCSSLNANDSRMAGCQNCCYGWGILDCFPASMEACFALVVVFVVIFAILGIAYSFLAATMAIQRIWQRHYHILTKRELTQEYVVEDLQGSYSPPKLDPEHEERLKMLKLL 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0684 313 MobiDBLite consensus disorder prediction 1 45 - -
Lele40g0684 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 121 IPR013083 -
Lele40g0684 313 ProSiteProfiles Zinc finger RING-CH-type profile. 50 115 IPR011016 GO:0008270
Lele40g0684 313 SUPERFAMILY RING/U-box 56 113 - -
Lele40g0684 313 SMART ringv_2 57 109 IPR011016 GO:0008270
Lele40g0684 313 CDD RING_CH-C4HC3_MARCH 58 109 - -
Lele40g0684 313 Pfam RING-variant domain 58 108 IPR011016 GO:0008270
Lele40g0684 313 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 15 313 - -
Lele40g0684 313 MobiDBLite consensus disorder prediction 22 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0684 Lele-ChrLele40 15806149 15808676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0684 1 313 C3H Transcription Factor Family AT1G11020 77.500 9.23e-169 469