Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0672 ATGGAGAAGCACAAGTGCAAGCTCTGCTTGAGAAACTTCTCTAATGGCAGAGCTTTGGGAGGTCACATGAGGTCTCACATGGTGAATCTTCCTCTTCCTCCAAAACCAGAGGACCCACCACCACCACCATTAGTCCAACTCAGCTTCGAAGCCGATTCTGCTCCGTCGTCTTCGTCGTCGTCGTCGTCCTCAGAAGAAGAAGAAGATGAAGATAAAGCTCTATGTTATGGCCTCAGAGATAACCCTAAAAGAAGCTTTCGCCTTGCGGATCCTGATTTTTCGTTCCCCGTAGAATCCTCCTCTGTAATTCTTCAAGACAGAGAAAGCGAAAATGAATCGTCCAAGAATAATCCAACTCGAACAAGATCCAAAAGGGTATGTAATAATAATAACAACAACCAGTTCCACCACCACCACCATCATCATCATCAGAAGAAGATGAAACCCAGTAATGATCATCATAAGAATAAGACCGAGTCGTCTTGGGTTGAGCCGGAACCGGTGAGTTCGATTTCTGATGCGACGACCGAGGAAGATGTAGCATTTTGGCTTATGATGTTGTCTAGGGACGAATGGAAGAGACAAGAGGAAAAATACGAAGAGGAAGAAGACGCCGACGAAGAAGAAGAGAGATCTATGGAAGATTCTGATGAATTCTACGAGGAGATGAAATCATCGAAGATAATATCATCAGTTCGTCGAAGGTACAAATGTGAGACATGTAATAAAGTGTTTCGATCATATCAAGCATTGGGAGGTCACAGAGCGAGTCACAAGAAAATCAAACCGGTGATATGTGAACCGGAAATTGATCAGCTTCAAGCGAATAATAATAATAATTCTCATACCATGGCGGCGGCGGCCGAGAAGAAAATCCATGAATGTGCGGTTTGTTTCAGAGTGTTTGCTTCAGGTCAAGCTCTTGGAGGCCACAAGCGAACGCACGTGACTGGTTCCGCAACAACAACTCCGGTTCGAACCCCATCAACCAGGTTCGGATCAGATAACAACAGTTTGATAGACCTTAATCTTCCTGCTCCAGTTGATGATGATGAGATCAGCCAAATTGAAAATTCTGCAGTTTCAGATGCAGAATTCCTCAAACCCAGTTCACAAATCTTCCGGACACAAGTAGCTTAA 1140 0.443 MEKHKCKLCLRNFSNGRALGGHMRSHMVNLPLPPKPEDPPPPPLVQLSFEADSAPSSSSSSSSSEEEEDEDKALCYGLRDNPKRSFRLADPDFSFPVESSSVILQDRESENESSKNNPTRTRSKRVCNNNNNNQFHHHHHHHHQKKMKPSNDHHKNKTESSWVEPEPVSSISDATTEEDVAFWLMMLSRDEWKRQEEKYEEEEDADEEEERSMEDSDEFYEEMKSSKIISSVRRRYKCETCNKVFRSYQALGGHRASHKKIKPVICEPEIDQLQANNNNNSHTMAAAAEKKIHECAVCFRVFASGQALGGHKRTHVTGSATTTPVRTPSTRFGSDNNSLIDLNLPAPVDDDEISQIENSAVSDAEFLKPSSQIFRTQVA 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0672 379 MobiDBLite consensus disorder prediction 134 151 - -
Lele40g0672 379 MobiDBLite consensus disorder prediction 200 216 - -
Lele40g0672 379 MobiDBLite consensus disorder prediction 32 46 - -
Lele40g0672 379 Gene3D Classic Zinc Finger 231 325 - -
Lele40g0672 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Lele40g0672 379 MobiDBLite consensus disorder prediction 99 174 - -
Lele40g0672 379 Pfam C2H2-type zinc finger 4 27 - -
Lele40g0672 379 Pfam C2H2-type zinc finger 293 315 - -
Lele40g0672 379 Pfam C2H2-type zinc finger 235 260 - -
Lele40g0672 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 293 320 IPR013087 -
Lele40g0672 379 MobiDBLite consensus disorder prediction 315 336 - -
Lele40g0672 379 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 369 IPR044303 GO:0006355
Lele40g0672 379 SUPERFAMILY beta-beta-alpha zinc fingers 234 266 IPR036236 -
Lele40g0672 379 Coils Coil 189 209 - -
Lele40g0672 379 MobiDBLite consensus disorder prediction 194 222 - -
Lele40g0672 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 236 263 IPR013087 -
Lele40g0672 379 SMART c2h2final6 236 258 IPR013087 -
Lele40g0672 379 SMART c2h2final6 4 26 IPR013087 -
Lele40g0672 379 SMART c2h2final6 293 315 IPR013087 -
Lele40g0672 379 MobiDBLite consensus disorder prediction 20 77 - -
Lele40g0672 379 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Lele40g0672 379 SUPERFAMILY beta-beta-alpha zinc fingers 289 317 IPR036236 -
Lele40g0672 379 ProSitePatterns Zinc finger C2H2 type domain signature. 238 258 IPR013087 -
Lele40g0672 379 MobiDBLite consensus disorder prediction 311 336 - -
Lele40g0672 379 ProSitePatterns Zinc finger C2H2 type domain signature. 295 315 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0672 Lele-ChrLele40 15178603 15179742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0672 1 356 C2H2 Transcription Factor Family AT3G60580 41.341 6.06e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele40g0672 zf-C2H2_6 4.1e-12 CL0361