Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0670 ATGGCTTTGAGTACCCTCGATCAGCATCAATCAAACTTGAAGCATTTCTGTAAGATCTGTAAGAAAGGTTTCGGGTGTGGGAGGGCGCTCGGTGGGCACATGAGAGCTCACGGCATGGGGGAGGACAGCTGGACCGTCGATGACGAGGAGGACGCCGAGAGTGACTGGGATGAAAAGCAGGGCGATGGCGGCGGCGGCGGCAATGTGCCGTCGAGTACAAGGCATATGTATGCTCTGAGGACGAACCCTAACAGATTCAAGCCCTGCAGGGTATGTGAGAATTGCGGTAAAGAGTTCTTGTCATGGAATTCCTTTTTTGAACATGGAAATGGAAAGTGCAGTAGTTCCGATCACATGGAGTCGCCGGTTTCTTCCCCGACGTCCGACGGTGATGGTGATGGTGATGACGACATGAGCCAGAGAGGTTGCGGTTCGTATAAACGGAAGAGGTCAGTCAGAACCAAAGTTGGTACGTTAAATTCTATATGTCCTTTAAGTGAAGAAGATGACCTGGCGGTCAACTGTCTCATGATGTTATCTAACGCCGCTATTGATCCTCTCGCTGTCACCACCGTTGCCGAGCCGGAGGAATCTAGTGCGTCAGCGAGCAGAGATGAGGAGAGAAGAAACCCTATAAACTTTATCACGCCAATATCTTATTGTGTTCCTGCCGTAGTGGATCACAAAGCTAAAACTACTGTGGTTCCTAAAGGCTTGTTTGAGTGCAAAGCATGCAAGAAAATCTTTAATTCTCATCAAGCGTTAGGTGGCCATAGGGCAAGCCACAAGAAAGTTAAAGGCTGCTTCGCTTCGAGACTCGACCAACTCGAAGATAAAGATGATGATGCCATAACTCATGAAGAGTTTCTGCCCTCAAAATCAAACTCAGTCACTCATCATGGTCATAGTAATCCTTCCAATAATAATGGCACGTTATTAATGGCGTCTTCGTCCAAAAGAAAATCCAAAGTTCATGAATGCTCGATATGTCACAGGACTTTCTCGTCGGGACAAGCCCTTGGAGGACACAAGAGGTGTCATTGGATCACACCAAACGCACCAGACACTTCCACATTGGCTAGGTTTCAGCAATTTCAAGAGCATATGGAGAGAATGAATCAAATTCCCAAGTTTGATAACTCATCGGAGCATATCGATCTAAAGCTCGACCTCAACCTTCCGGCTCCTCTAGCCGATGAACTGGCACGGCGGACGGAAATTTTCTTACAGCCATGGTTAGGAGGAACGACAAAGCAGAAGGATCAAAATAATAATAATAATAATAATAATACTCATACTAATAGTCAATGTCACAGCCCCAGCAACCGCGAAGTACCCCACCATCAGCATCGCCATGAAAATGAAAACGACAACGAAAACAACAAAAATAATAACAATAACAGTACTGTTTCCATGGAAAATGTTGGAGATGAAGCTGACAGTAAGGTGAAGTTAGCTAAACTAAGTGAGCTAAAGGACATGAATATAGGTGGGAGTTCTTCCCCATGGTTGCAGGTGGGGATTGGTTCAACCACTGGTGTGGGAGCTGAACCATAA 1557 0.4611 MALSTLDQHQSNLKHFCKICKKGFGCGRALGGHMRAHGMGEDSWTVDDEEDAESDWDEKQGDGGGGGNVPSSTRHMYALRTNPNRFKPCRVCENCGKEFLSWNSFFEHGNGKCSSSDHMESPVSSPTSDGDGDGDDDMSQRGCGSYKRKRSVRTKVGTLNSICPLSEEDDLAVNCLMMLSNAAIDPLAVTTVAEPEESSASASRDEERRNPINFITPISYCVPAVVDHKAKTTVVPKGLFECKACKKIFNSHQALGGHRASHKKVKGCFASRLDQLEDKDDDAITHEEFLPSKSNSVTHHGHSNPSNNNGTLLMASSSKRKSKVHECSICHRTFSSGQALGGHKRCHWITPNAPDTSTLARFQQFQEHMERMNQIPKFDNSSEHIDLKLDLNLPAPLADELARRTEIFLQPWLGGTTKQKDQNNNNNNNNTHTNSQCHSPSNREVPHHQHRHENENDNENNKNNNNNSTVSMENVGDEADSKVKLAKLSELKDMNIGGSSSPWLQVGIGSTTGVGAEP 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0670 518 ProSitePatterns Zinc finger C2H2 type domain signature. 17 37 IPR013087 -
Lele40g0670 518 ProSiteProfiles Zinc finger C2H2 type domain profile. 325 347 IPR013087 -
Lele40g0670 518 MobiDBLite consensus disorder prediction 415 442 - -
Lele40g0670 518 PANTHER OS02G0659100 PROTEIN 7 512 - -
Lele40g0670 518 MobiDBLite consensus disorder prediction 494 518 - -
Lele40g0670 518 SMART c2h2final6 325 347 IPR013087 -
Lele40g0670 518 SMART c2h2final6 240 262 IPR013087 -
Lele40g0670 518 SMART c2h2final6 15 37 IPR013087 -
Lele40g0670 518 MobiDBLite consensus disorder prediction 494 508 - -
Lele40g0670 518 MobiDBLite consensus disorder prediction 39 74 - -
Lele40g0670 518 SUPERFAMILY beta-beta-alpha zinc fingers 322 348 IPR036236 -
Lele40g0670 518 MobiDBLite consensus disorder prediction 113 128 - -
Lele40g0670 518 Pfam C2H2-type zinc finger 324 349 - -
Lele40g0670 518 Pfam C2H2-type zinc finger 240 264 - -
Lele40g0670 518 Pfam C2H2-type zinc finger 15 37 - -
Lele40g0670 518 ProSitePatterns Zinc finger C2H2 type domain signature. 242 262 IPR013087 -
Lele40g0670 518 MobiDBLite consensus disorder prediction 443 459 - -
Lele40g0670 518 ProSitePatterns Zinc finger C2H2 type domain signature. 327 347 IPR013087 -
Lele40g0670 518 ProSiteProfiles Zinc finger C2H2 type domain profile. 240 267 IPR013087 -
Lele40g0670 518 MobiDBLite consensus disorder prediction 113 146 - -
Lele40g0670 518 MobiDBLite consensus disorder prediction 291 311 - -
Lele40g0670 518 MobiDBLite consensus disorder prediction 414 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0670 Lele-ChrLele40 15045201 15046757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0670 87 393 C2H2 Transcription Factor Family AT1G02040 35.144 1.53e-32 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele40g0670 zf-C2H2_6 2.3e-12 CL0361