Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0659 ATGAGCTTCTGCGTTCCCACCTGGGATGTTGACAACAGCAATGTTCCCTCTGCCCCCAGAACCTCTCTTCCTTCTAACTCCAACTCCACCGTCCCTGATCTCATCCCCACGTTTGACTATGAAGTTGCAGAGCTTACATGGCAGAACGGGCAGATATGGATGAAAGGGATGGGTCTGCCACGACCTTCGGCTAAACACATGACTTCTGGTGTGGCGGCGGGTACGAGGTCCGATCCGTTGACGACCAATGCCCATTCGAAGTTTCGTGCTAGCGGTACCTTAGAGTCTATAGTCAATCAGGCTACTAGGTTTTCCCAGAACACCAAATCAATGTCACAAAGTGTTGACAGTGACGGAGACAAGTTAGTAGTGCCATGGTTTGAACACCAACGTGGCGCCGGCGCTGCTGTATCAAACACAATGACTATGGATGCTTTGGTTCCGTGCTCGAATCGTACGGACGATCAGAGTACGGCGGTTGTGGATGAATTCATGGGTGGTGGAGGGATTGGTACGCGCGGCGGCGGGGTCGGTTGCTCGGCACATGTGGTGTCTTGCGGTGGTGCTGCGATGGTCCAGGGGGAGGCGCGTGTGCCTGTAGCTCGCCCTTGGGATCAAACTGTGAGTGAGAGAGATAGCCATCACGTGACCCCTGACACGTGCGACATGGAAATGGAGGTGGGTTATACTTCTGCTTCAATGGGTTCGCCGGAAAACACCAGCTCCATCCGGCCGTGCACAAAGATGACCACCGCCGACGACCATGATTCCTTTTGCCACAGTACACAGAGAGAAGAAGATGAGGAGGAGGACAAAAAAGAAAGAACTGTAAAATCTTCATCGTCCAACAAACGGCGAAGAGCTGCTGATGTTCACAATCAGTCTGAAAGAAAAAGACGAGATAAGATAAATCAAAGGATGAAGATATTGCAGAAGCTGGTTCCAAATTCCAGCAAGACTGATAAAGCTTCAATGCTGGATGAGGTAATAGATTATGTGAAGCAACTTCAAGCACAAGTGCAAATGATGAATAGAATGAGCCTATCTTCCATGATGTTGCCAATGACCCTGCAACAGCAACAATTTCAACTCATGTCCATGATGGCTCCAATGGGGATGGGATTGGGTATGGATATGAACACTATGGCCCGCCCTAACATCCCCACCGTGCCTCCGATTCTCCACCCTTCCATTGCAGCCGGCTTCATGCCGATGGCCGCCTCATGGGACGCTTCTACTGGCGGCAATCGTCTTCAAGGAGCAATGCCTGACTTCTTGTCCTCATTCATAGCATGCCAAACACAGCCCATGACCATGGATGCATACAGTAGGATGGCTGCTATGTATCAGCAAATGCAGCAAGCTCCAGCATCAAGTTCCAAGAACTGA 1389 0.5068 MSFCVPTWDVDNSNVPSAPRTSLPSNSNSTVPDLIPTFDYEVAELTWQNGQIWMKGMGLPRPSAKHMTSGVAAGTRSDPLTTNAHSKFRASGTLESIVNQATRFSQNTKSMSQSVDSDGDKLVVPWFEHQRGAGAAVSNTMTMDALVPCSNRTDDQSTAVVDEFMGGGGIGTRGGGVGCSAHVVSCGGAAMVQGEARVPVARPWDQTVSERDSHHVTPDTCDMEMEVGYTSASMGSPENTSSIRPCTKMTTADDHDSFCHSTQREEDEEEDKKERTVKSSSSNKRRRAADVHNQSERKRRDKINQRMKILQKLVPNSSKTDKASMLDEVIDYVKQLQAQVQMMNRMSLSSMMLPMTLQQQQFQLMSMMAPMGMGLGMDMNTMARPNIPTVPPILHPSIAAGFMPMAASWDASTGGNRLQGAMPDFLSSFIACQTQPMTMDAYSRMAAMYQQMQQAPASSSKN 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0659 462 SMART finulus 293 342 IPR011598 GO:0046983
Lele40g0659 462 MobiDBLite consensus disorder prediction 232 248 - -
Lele40g0659 462 CDD bHLH_AtPIF_like 287 347 - -
Lele40g0659 462 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 42 461 IPR031066 -
Lele40g0659 462 FunFam transcription factor UNE10 isoform X1 282 347 - -
Lele40g0659 462 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 291 357 IPR036638 GO:0046983
Lele40g0659 462 Gene3D - 270 347 IPR036638 GO:0046983
Lele40g0659 462 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 287 336 IPR011598 GO:0046983
Lele40g0659 462 MobiDBLite consensus disorder prediction 64 84 - -
Lele40g0659 462 Pfam Helix-loop-helix DNA-binding domain 292 337 IPR011598 GO:0046983
Lele40g0659 462 Coils Coil 293 313 - -
Lele40g0659 462 MobiDBLite consensus disorder prediction 231 304 - -
Lele40g0659 462 MobiDBLite consensus disorder prediction 249 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0659 Lele-ChrLele40 14620162 14623665 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0659 1 443 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 44.737 4.03e-84 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele40g0659 HLH 2.1e-13 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0802 37 17537411 17540922 Lele40g0659 40 14620162 14623665 hybridization
Lele38g0733 38 18498656 18502276 Lele40g0659 40 14620162 14623665 hybridization