Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0648 ATGGATATGTCCTTTTCAAACTCATTTCGCACCGATGACCTTATCAACTTCTCCAATGTAGACCTCACCACCACCACCTCCTCCTCTTCCTCCACCGACTCCGACTGCCGCCGTCAGCCACTGCTCCCTCCACCGCAAAACCCATTTCCCCATCACCACCCCCGCAACAACCAATCCTCCTCCACCACCTCCTTCAATGATTTCCCTCCCCTCCCTTCCGCCGACCCCACTGTCGATCTACTCATCCCCAACGACGACGTAGCGGAGCTGGAATGGCTCTCGCAATTCGTGGACCATTGCTTCCATGACGATTTTCAGGCGACAGGGGAGACGGTGGTGGTGGGTTCTTCTGTTCCGCAATCCGACGACACGACGTTTACTAGCAAAGCTGATCTTATTCATAGCAAGCGTTCGAGAGCAGCCGGTGGAAAATCGAGACTCAAAACAGAGCCAAACGGCGGGTCGTTGCCGTTTTCAGCGGCGGGCGAGGGATCAGATGTGCGTAGGTGCACCCACTGTGCAACAGAGAAAACCCCGCAATGGCGAAGCGGACCACTAGGACCCAAGACGCTGTGTAACGCGTGTGGGGTGAGGTACAAGTCGGGTCGACTTGTACCCGAATACCGACCCGCATCGAGTCCAACGTTCGTGCTGAGTCAGCACTCGAACTCGCACCGGAAGGTGCTAGAGCTCCGGCGGCAGAAGGAGCTGGTGTTGACGAAGCAGGAAGCCCGCCGAGAATAA 744 0.5672 MDMSFSNSFRTDDLINFSNVDLTTTTSSSSSTDSDCRRQPLLPPPQNPFPHHHPRNNQSSSTTSFNDFPPLPSADPTVDLLIPNDDVAELEWLSQFVDHCFHDDFQATGETVVVGSSVPQSDDTTFTSKADLIHSKRSRAAGGKSRLKTEPNGGSLPFSAAGEGSDVRRCTHCATEKTPQWRSGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLSQHSNSHRKVLELRRQKELVLTKQEARRE 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0648 247 CDD ZnF_GATA 169 216 IPR000679 GO:0006355|GO:0043565
Lele40g0648 247 MobiDBLite consensus disorder prediction 20 71 - -
Lele40g0648 247 MobiDBLite consensus disorder prediction 52 70 - -
Lele40g0648 247 SMART GATA_3 164 214 IPR000679 GO:0006355|GO:0043565
Lele40g0648 247 ProSiteProfiles GATA-type zinc finger domain profile. 164 200 IPR000679 GO:0006355|GO:0043565
Lele40g0648 247 Pfam GATA zinc finger 170 203 IPR000679 GO:0006355|GO:0043565
Lele40g0648 247 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 167 226 - -
Lele40g0648 247 PANTHER GATA TRANSCRIPTION FACTOR 130 238 - -
Lele40g0648 247 MobiDBLite consensus disorder prediction 138 161 - -
Lele40g0648 247 Gene3D - 162 243 IPR013088 GO:0006355|GO:0008270
Lele40g0648 247 PIRSF Txn_fac_GATA_plant 144 247 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lele40g0648 247 PIRSF Txn_fac_GATA_plant 1 155 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lele40g0648 247 FunFam GATA transcription factor 161 246 - -
Lele40g0648 247 MobiDBLite consensus disorder prediction 20 37 - -
Lele40g0648 247 ProSitePatterns GATA-type zinc finger domain. 170 195 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0648 Lele-ChrLele40 14330585 14331514 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0648 42 245 C2C2-Gata Transcription Factor Family AT2G45050 48.069 7.56e-57 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele40g0648 GATA 1e-16 CL0167