Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0641 ATGGCCGCCTCATCCACTGCCTCCTTTTCACCGGACCAGCACTTCCTCTCTCCCTCCGACCAGCTCTGTTATGTCCATTGCGACTTCTGTGACACTGTCCTGGCGGTGAGTGTTCCTTGCACCAGTTTGTTCAAGACTGTCACTGTACGATGCGGTCATTGCACCAACCTTCTCTCTGTCTATATGCGTGACCTGCTTCTTCCTTCTGCCAATCAGCTTCATCTTGGACACTCCTTCTTCACTCCCCAAAACCTTCTGGTATAA 264 0.5152 MAASSTASFSPDQHFLSPSDQLCYVHCDFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVYMRDLLLPSANQLHLGHSFFTPQNLLV 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0641 87 Pfam YABBY protein 18 73 IPR006780 GO:0007275
Lele40g0641 87 PANTHER PROTEIN YABBY 6-RELATED 10 71 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0641 Lele-ChrLele40 11680126 11680475 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0641 19 62 C2C2-YABBY Transcription Factor Family AT2G26580 68.182 1.40e-18 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lele40g0641 YABBY 6.9e-27 CL0114