Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0621 ATGGCGGCGGTTAATCTTCCTGCTCAGAGGGTAACAAGGTCAACGGCGGCAAATTCTCCGGATAAACGACCCTGTTCGATATTCGAACTCCCGCCTGACTTTTTTCACTCCTGTCGCCTCCTTGCTTCTCCTCAATCGTCCGTTCCTGACAACCTTCAGAATTGCAATGACTCAGTCCACGAAACCCTTGACCCTTTTGAGAACGACGCTAATGGCTCCCAAGACGTCGTTGTTTCAATGGCCAGGTGGACTTGCAATACTTGCAAGGCTCAATTTGAGTCCCTTCTAGACCAGCGGTGGCATTTTAAATCGGATATTCATCGGTTCAATGTGAAGTTGACAATGGCTGGAAAGAATATTGTTAAGGAAGAAGATTTTGAGCTGTTGACATCTGATTCTATTAAAGACTATGATGTTTCGAGTATATCAGGATCAGAAGATGATGATAACGAAATTGAGACTCATAGACAAAATAAAGTTCGTAACAAATTAAGTGAAAGTTTGAGGCAAAAGTTATTTGTCCGCCTAATGACAGGGAAGAGAGTTTCTGTTTGGAAGTGCTTAATAATGAACATGGGTGAGAATGTACTTAATGAGAACGAAGTGGTTGAGAGGTTGAAGTCTTTGACTCTAGGGCCCAGGAATAATTCTCGCTTGAGAATTGTGCTTCTTGCATCTGGTGGGCACTTTGCAGGTTGTGTGTTTGATGGTGATAAGCTTGTGGCTCACAAGACATTCCACAGATATGTTGTTAGGGCCAAGGCAGGGAAAAAACAGTCATCAAAAGATGCTACTGGCAGGGCTGCACATTCTGCTGGGGCTTCACTCCGTCGCCTCAATGAACTTGCATTAAAGAAGGAAATTCAAGAGCTGCTTACTGGTTGGAGAAATTATTTGGATGCTTCAAATTGCATATTCCTACATGCTGCTTCAAGCAGTCGTCAACTGTTCTTTGATGGAGAGAGACCGTATTTTAGCAATCAGCATAATGTTATTAGAAATATTCCATTGACTGTTCGAAGGCCTACTTTAAGAGAGGCAAAACGTGTATATAACCAGTTGACTGAAGTATCCTATGAAGCAGAAGAGGATTTAGAGTCAACTCCCATTACTGTAAGAAATGCCAACCCAGCCATTGACAAAGAGGCCCTTGATGACTTAGATAGCAAGGATAAAAGTGAGGTTTGTTCGAGCAAACAAGCTAATTATGAACTCCTTATTTCAAGTGCCAGTGAGAGTGAAAATGGGATAGTGGGTAAATCAACACCTTTACATCAAGTAGCACAATCTGGTGACTCTCACAAGGTTTTGGAGCTACTGGAGCAGGGTATGGATCCTTGCATCAAAGATGAAAGAGGAAGGACCCCTTATATGTTGGCGCATGTTAAGGAAGTGAGGAATGCTTTCAGAAGGTTCATGGCATCAAACCTTGAAAAATGGGATTGGCATGCGGCAAAAGTTCCCAGTGCATTGACCAAAGAAATGGAAGAATCACAAGCAGATAAGCAGGCTGAAAAAGATGCCAAGAGAAAAGCCAGAGCAAAAGAATTAAAAAAATTACGTAAAGCAAAAGAAAAAAAGGCTCAGGTTGAAGCTGCTAAGAATGCTTCCAAAACTGCAGAAAACCCAGGGAATGCTTCAACTTCTATTTATAAAGGACAATCCCAACCCAACAGTGGGTTGAAATTATCTGAAGAGGAGAAACTCAAAAGAGCTCAGGCTGAAGAAAGAGAGAAGAGAGCAGCTGCTGCAGAAAGAAGACTTGCTGCCCTCAAGATTCAAGGCGGCGGTGCGACCAATGTCCCAAGCACTTCAGAACCAAAAAGTGGAGCAGCCAGTGACATATATTGTTCCTGTTGTAATACCTCACTTGCTGGTAAAGTTCCATTCCGTAGGTATAATTATAAATACTGCAGCACTTCATGCATGCATGTACACAGGGAGATCTTAGAGGATGAATGA 1962 0.4251 MAAVNLPAQRVTRSTAANSPDKRPCSIFELPPDFFHSCRLLASPQSSVPDNLQNCNDSVHETLDPFENDANGSQDVVVSMARWTCNTCKAQFESLLDQRWHFKSDIHRFNVKLTMAGKNIVKEEDFELLTSDSIKDYDVSSISGSEDDDNEIETHRQNKVRNKLSESLRQKLFVRLMTGKRVSVWKCLIMNMGENVLNENEVVERLKSLTLGPRNNSRLRIVLLASGGHFAGCVFDGDKLVAHKTFHRYVVRAKAGKKQSSKDATGRAAHSAGASLRRLNELALKKEIQELLTGWRNYLDASNCIFLHAASSSRQLFFDGERPYFSNQHNVIRNIPLTVRRPTLREAKRVYNQLTEVSYEAEEDLESTPITVRNANPAIDKEALDDLDSKDKSEVCSSKQANYELLISSASESENGIVGKSTPLHQVAQSGDSHKVLELLEQGMDPCIKDERGRTPYMLAHVKEVRNAFRRFMASNLEKWDWHAAKVPSALTKEMEESQADKQAEKDAKRKARAKELKKLRKAKEKKAQVEAAKNASKTAENPGNASTSIYKGQSQPNSGLKLSEEEKLKRAQAEEREKRAAAAERRLAALKIQGGGATNVPSTSEPKSGAASDIYCSCCNTSLAGKVPFRRYNYKYCSTSCMHVHREILEDE 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0621 653 Pfam Vms1-associating treble clef domain 616 648 IPR041540 -
Lele40g0621 653 MobiDBLite consensus disorder prediction 495 512 - -
Lele40g0621 653 MobiDBLite consensus disorder prediction 535 562 - -
Lele40g0621 653 MobiDBLite consensus disorder prediction 1 22 - -
Lele40g0621 653 MobiDBLite consensus disorder prediction 563 583 - -
Lele40g0621 653 Gene3D - 389 540 IPR036770 -
Lele40g0621 653 ProSiteProfiles Ankyrin repeat profile. 419 451 IPR002110 GO:0005515
Lele40g0621 653 MobiDBLite consensus disorder prediction 493 583 - -
Lele40g0621 653 PANTHER ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 18 652 - -
Lele40g0621 653 Coils Coil 562 594 - -
Lele40g0621 653 SUPERFAMILY Ankyrin repeat 421 472 IPR036770 -
Lele40g0621 653 Coils Coil 495 540 - -
Lele40g0621 653 Pfam Bacteroidetes VLRF1 release factor 221 359 IPR041175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0621 Lele-ChrLele40 6276397 6296099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0621 17 524 C2H2 Transcription Factor Family AT1G01930 55.810 0.0 565