Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0607 ATGGTGAGAGGAAAAATAGAGATGAAGCGTATTGAGAACGCTGCCAACAGACAAGTTACCTTCTCAAAGAGGCGTAACGGATTGTTAAAGAAGGCTTTTGAGCTGTCAGTTCTCTGTGAAGCTGAGGTTGCTCTCATCATCTTCTCTCCCAGAGGCAAGCTCTATGAATTTGCAAGCTCCAGGTTGCAGGATACAATTGAACGATATCGTAGTTATACTAGAGATGCTGAGACAGCCTCCAGATACATGGAACAAAATATGCAGCTTTTAAAAGAAGAAACAGGAAGCATGATGGAGAAGGTTGAACATCTTGAAGCTTCAAGACGGAGACTCTTGGGAGAAGGATTAGGCTCATGCTCGCTAGCAGAGCTAGAAGAGCTACAACAGCAGTTGCAAAGGAGTGTAAACAACGTCCGAGCAAGAAAGAATCAGGCTTTTAGAGAACAAATGGAACGATTAACAGAGAAGGAACAAACCCTAAAAGCAGAAAACGCAAGGCTCTTTGAAAAGTATAATATTATTATCAAGGCTGCAGCTCATGAGACGACAGAGAATACTGCAAGGGAAAATCCAACCTCCTTAGAAGATGGTGCAACTTTAGATGTGGAAACTGACTTGTTCATTGGACTCCCAGAAACAAGAACAAGACGCAATATTCTTCCTCTCCATGAACTCTAA 678 0.4233 MVRGKIEMKRIENAANRQVTFSKRRNGLLKKAFELSVLCEAEVALIIFSPRGKLYEFASSRLQDTIERYRSYTRDAETASRYMEQNMQLLKEETGSMMEKVEHLEASRRRLLGEGLGSCSLAELEELQQQLQRSVNNVRARKNQAFREQMERLTEKEQTLKAENARLFEKYNIIIKAAAHETTENTARENPTSLEDGATLDVETDLFIGLPETRTRRNILPLHEL 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0607 225 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
Lele40g0607 225 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Lele40g0607 225 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele40g0607 225 Coils Coil 121 170 - -
Lele40g0607 225 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Lele40g0607 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 158 - -
Lele40g0607 225 Gene3D - 14 95 IPR036879 GO:0003677|GO:0046983
Lele40g0607 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele40g0607 225 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele40g0607 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele40g0607 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele40g0607 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele40g0607 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele40g0607 225 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele40g0607 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0607 Lele-ChrLele40 5706386 5712878 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0607 1 156 MADS-box Gene Family AT2G45660 66.026 3.20e-74 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele40g0607 K-box 2.6e-21 No_clan