Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0606 ATGCTTCAGGTGGGTGTGGGTCATAGATTAATAAGGAAAGAAATTGAGAAGATGGTGAGAGGGAAAACACAGATGAAGCGTATAGAGAACGCTACAAGCAGGCAAGTGGCATTCTCAAAGAGACGAAATGGACTTTTAAAGAAAGCTTTTGAGCTCTCAGTTCTGTGTGATGCTGAAGTTGCTCTCATCATCTTCTCTCCAAGAGGCAAGCTCTATGAATTTGCTAGCTCCAGCATGCAGGCAACAATTGAACGGTACCGCAATCATAACAGAGATGCTCAAACAGCAACCATATTTGTTGAACGAAATATGCAGCATCTAAAGCAAGAAACAGCGCAAATGATGAAGAAGATTGAGCAGCTTGAAATTTCAAAACGGAAGCTCTTGGGAGAAGATTGTGGCTCATGCTCCGTGAAAGAACTAGAAGACATAGAACAGCAATTGGAAAGGAGTGCAAGAAAAGTTCACGAGAGGAAGAATCAAGTTTTTAACGAACAAGTGGAGCAACTAAAAGAAAAGGGAAAAGCCCTAGCATCAGAAAATGCAAGGCTCTCTGAGAAGTATAATACCATGACAAGGCAAGCAAGGGAGAGGAATCATGGTGAAAATCCAGCCTCCCTAGAAAATAGTCCAACTTCAGAAGTAGAAACTGACTTGTTCATTGGATTACCAGAAACAAGAGGCATCACACTTCTTCCTGATGTGGTCTGA 711 0.4191 MLQVGVGHRLIRKEIEKMVRGKTQMKRIENATSRQVAFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQATIERYRNHNRDAQTATIFVERNMQHLKQETAQMMKKIEQLEISKRKLLGEDCGSCSVKELEDIEQQLERSARKVHERKNQVFNEQVEQLKEKGKALASENARLSEKYNTMTRQARERNHGENPASLENSPTSEVETDLFIGLPETRGITLLPDVV 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0606 236 PRINTS MADS domain signature 40 55 IPR002100 GO:0003677|GO:0046983
Lele40g0606 236 PRINTS MADS domain signature 20 40 IPR002100 GO:0003677|GO:0046983
Lele40g0606 236 PRINTS MADS domain signature 55 76 IPR002100 GO:0003677|GO:0046983
Lele40g0606 236 Coils Coil 138 187 - -
Lele40g0606 236 FunFam MADS-box protein SOC1 31 112 - -
Lele40g0606 236 ProSiteProfiles MADS-box domain profile. 18 78 IPR002100 GO:0003677|GO:0046983
Lele40g0606 236 SMART madsneu2 18 77 IPR002100 GO:0003677|GO:0046983
Lele40g0606 236 CDD MADS_MEF2_like 20 95 IPR033896 GO:0000977|GO:0045944
Lele40g0606 236 Gene3D - 30 123 IPR036879 GO:0003677|GO:0046983
Lele40g0606 236 ProSiteProfiles K-box domain profile. 104 194 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele40g0606 236 PANTHER SERUM RESPONSE FACTOR HOMOLOG 20 191 - -
Lele40g0606 236 SUPERFAMILY SRF-like 20 93 IPR036879 GO:0003677|GO:0046983
Lele40g0606 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 27 74 IPR002100 GO:0003677|GO:0046983
Lele40g0606 236 Coils Coil 104 124 - -
Lele40g0606 236 MobiDBLite consensus disorder prediction 192 214 - -
Lele40g0606 236 Pfam K-box region 103 188 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0606 Lele-ChrLele40 5681371 5693986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0606 18 175 MADS-box Gene Family AT2G45660 73.418 1.81e-79 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele40g0606 K-box 2.3e-24 No_clan