Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0588 ATGGTGGAACAACGTGGAGAAGATGATGACAAGTATTCCATTCAAGACTGGTTCTTGCGAGCTCAAGAACTCGTACCGGTTGCGATTAACAAGGCGAAAGAAGAGGTGAAGGGATTTTCTTGTAGATGGAAAGTGATTGTTTCAAAGATAGAACAAATCCCATCATGCTTATCAGACTTGTCTAGCCATCCTTGTTTCTCCAAGAATGCTCTTTGTAAGGAGCAATTGCAGGCTGTGTCGAAGACACTCGAGGAAGCCATCGATTTAGCCGAGTTATGCGCGAAAGAGAGAGTATTGATCAAGACTGGTGTTCTTGGTGAGTCTACTTTTCCTTTGGGTTTGTCCGATGATGCGAAACAAAGGAACGATGTAAGAGAATTGTTCGCACGCCTTCAGATTGGTGACTTGGAGGCGAAGTATAAAGCTATAGACAGTGTTATTGAAGCAATGAAGGAAGAAGAAAAGAGTGTTATGTCTGTTATAGGAAGAAGCCAAATTGCTTCCTTAGTTCAATTGTTAATGGCTACTTGTAATAGGATAAGGGAAAAAGCAGTTACTGTCATATGTTTTCTTGCAGAATCCGGGAAGAACTCCGAGAATTGGCTTGTTTCTGAAGGAGTTGTACCGCCTCTGATTCGGCTTCTCGAATCCGGTGGGGCTATTGGGAAAGAGAAGGCTGCAATGTGCCTTCAGAGGATGTCCATGTCGGAGGAATCAGCCCGAGAAATCGTCGGACATGGCGGTGTTAGGCCACTGATTGAGCTGTGTCATAATGGTGATTCTTTGTCCCAATCTACTGCTGCTTGTTCCTTGAAGAACATATCCTCAGTTCCTGAAGTGAGACAATCTTTGTCTCAAGAAGGCATTGTGAAGACTATGATAAATCTCCTTGATTATGGGATTCTGCTAGAATCCAAGGAATCTGCTTCAGAATGTTTACAGAACCTCACATCAAGCAATGAGAATCTAAGAAAGTCTGTTATATCAGAAGGTGGTGTTAGGAGTCTTCTTGCTTATCTTGATTCTCCAATTCCTCGAGAATCAGCTGTCACGGCGTTGAGGAATCTAGTCGGATCAATCAGCCAGCGGGATTTGATCTCATTAGGCCTCCTTCCTCGTTTGATCCACGTGCTAAACTCGGGATCTTCCGGAGCTCAGCAGGCGGCGGCCTCAACAATATGTCGAGTTTTGATTTCATCAGATATGAAGAAAATTGTGGCTGGGGCCGGATTCATCCCACTGCTAATCAAAATGCTGGAATCTAAATCGAATAGCGCGAGGGAATTCGCGGCCCAAGCCATCGCGAGCTTGATGACGGTTACACAAAACCGCGGGGAGGCGAGGAGGAATGACAAGGGTGTGCCGAATCTGGTTCAGTTGCTTGATCCAAGTCCACATAATACTGCAAAGAAATATGCAATTTCTTGTTTATGTTCACTTTCTTCAAGCAGGAAAAGTAAGAAGCTGATGATTGCTTATGGGGCAATTGGATATCTAAAGAAGCTTAAAGAGATGGACATTCCAGGAGCTAAAATGCTACTTGATAGATTGGAAAGAGGGAAATTCAGAAGCTTATTCTGCAGAAAATGA 1590 0.4384 MVEQRGEDDDKYSIQDWFLRAQELVPVAINKAKEEVKGFSCRWKVIVSKIEQIPSCLSDLSSHPCFSKNALCKEQLQAVSKTLEEAIDLAELCAKERVLIKTGVLGESTFPLGLSDDAKQRNDVRELFARLQIGDLEAKYKAIDSVIEAMKEEEKSVMSVIGRSQIASLVQLLMATCNRIREKAVTVICFLAESGKNSENWLVSEGVVPPLIRLLESGGAIGKEKAAMCLQRMSMSEESAREIVGHGGVRPLIELCHNGDSLSQSTAACSLKNISSVPEVRQSLSQEGIVKTMINLLDYGILLESKESASECLQNLTSSNENLRKSVISEGGVRSLLAYLDSPIPRESAVTALRNLVGSISQRDLISLGLLPRLIHVLNSGSSGAQQAAASTICRVLISSDMKKIVAGAGFIPLLIKMLESKSNSAREFAAQAIASLMTVTQNRGEARRNDKGVPNLVQLLDPSPHNTAKKYAISCLCSLSSSRKSKKLMIAYGAIGYLKKLKEMDIPGAKMLLDRLERGKFRSLFCRK 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0588 529 Coils Coil 528 529 - -
Lele40g0588 529 Coils Coil 133 153 - -
Lele40g0588 529 Pfam Armadillo/beta-catenin-like repeat 239 276 IPR000225 GO:0005515
Lele40g0588 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 288 332 IPR000225 GO:0005515
Lele40g0588 529 Gene3D - 121 512 IPR011989 -
Lele40g0588 529 SUPERFAMILY ARM repeat 165 502 IPR016024 -
Lele40g0588 529 SMART arm_5 195 235 IPR000225 GO:0005515
Lele40g0588 529 SMART arm_5 319 358 IPR000225 GO:0005515
Lele40g0588 529 SMART arm_5 399 439 IPR000225 GO:0005515
Lele40g0588 529 SMART arm_5 277 318 IPR000225 GO:0005515
Lele40g0588 529 SMART arm_5 359 398 IPR000225 GO:0005515
Lele40g0588 529 SMART arm_5 441 482 IPR000225 GO:0005515
Lele40g0588 529 SMART arm_5 236 276 IPR000225 GO:0005515
Lele40g0588 529 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 11 97 - -
Lele40g0588 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 206 248 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0588 Lele-ChrLele40 5274511 5276179 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0588 274 505 U-box Gene Family AT2G23140 26.891 2.09e-07 52.0