Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0587 ATGGCAGAAGCTGAATCAAACAGACCCATCACAAAGATCAAAAGGTTCATAGGGGTCAGGCAAAGGCCTTCAGGAAGGTGGGTGGCTGAGATCAAAGAATCATCTCAACACGTGAGGCTATGGCTCGGAACCTATGACACACCGGAGGAAGCGGCTCGGGCTTACGACGAAGCGGCTCGGACCTTACGTGGTGAAAACGCCCGAACCAACTTTGCGCCGCCAGCTAGCCAATCAGCCACAGGTGATCAGTTTGGGTCCGAAGCCAAGCATAGGCTAAATTGTGCTTCTTTGAAAGCTAAGCTGAGCAAGAATCTTCAGAGTATAATGACCAGATCAGGAAGCGAAACGACGTCGTCAAAGAGTAGGGTAAGTGACCATATCACTTTTGCTAGCATATTTCATCCGAGGAGTTTCCTATCCTATCAGATCTCTTCATCACTTGCTACAATGAAGAACATGGAGAATATGGTGCAGCCTAGCATTATAGTACCACCTGCTGAAGATGATAATCATCAGTCTTGTTCTTGGGAAAATTCCAGTCTCTCTGATGATTGTGGCTGCTCCGATCATTGGGTCGGGTTCCGGCAAACTGTGATGGAAGACTCTGCTGTGTCAGACAGGTCGGATGCCGGGGAAGTTAGTACTGAAGGGGATCATCAAGGGCTTATGGAGCAAGGGATGGGGTGGATCAATTGTGGTCCTGAGGAAAGTTCAAGAAGTAAGAGGCTTAAGGTGTCTTCTTCAGTATTTGTGCCTCCAACTTTCACTGGTTATCCATGTAGTAGTAGTAGTTGTGGCCCTCCCTATTATGGTTATGATATTTAA 825 0.4739 MAEAESNRPITKIKRFIGVRQRPSGRWVAEIKESSQHVRLWLGTYDTPEEAARAYDEAARTLRGENARTNFAPPASQSATGDQFGSEAKHRLNCASLKAKLSKNLQSIMTRSGSETTSSKSRVSDHITFASIFHPRSFLSYQISSSLATMKNMENMVQPSIIVPPAEDDNHQSCSWENSSLSDDCGCSDHWVGFRQTVMEDSAVSDRSDAGEVSTEGDHQGLMEQGMGWINCGPEESSRSKRLKVSSSVFVPPTFTGYPCSSSSCGPPYYGYDI 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0587 274 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 14 168 - -
Lele40g0587 274 Gene3D AP2/ERF domain 14 73 IPR036955 GO:0003700|GO:0006355
Lele40g0587 274 FunFam ethylene-responsive transcription factor RAP2-11 14 73 - -
Lele40g0587 274 CDD AP2 14 72 IPR001471 GO:0003700|GO:0006355
Lele40g0587 274 ProSiteProfiles AP2/ERF domain profile. 15 72 IPR001471 GO:0003700|GO:0006355
Lele40g0587 274 SMART rav1_2 15 78 IPR001471 GO:0003700|GO:0006355
Lele40g0587 274 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Lele40g0587 274 PRINTS Ethylene responsive element binding protein signature 38 54 IPR001471 GO:0003700|GO:0006355
Lele40g0587 274 SUPERFAMILY DNA-binding domain 15 72 IPR016177 GO:0003677
Lele40g0587 274 Pfam AP2 domain 15 64 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0587 Lele-ChrLele40 5259760 5260584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0587 15 72 AP2-EREBP Transcription Factor Family AT5G19790 72.414 2.47e-25 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele40g0587 AP2 9.2e-16 CL0081