Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0580 ATGAGTTTTGGGGGTTTTCTGGACAATAACTGGGGTGGTAGCGGTGGGGGGTCTGGCGGTGCCAGAATCGTCGCCGATATCCCTTACAGTAACGGCACAAACGATAATACAATGGCGTCGGGCGGTTCAATCTCACAGCCTCGTCTTCTCTCACCACCCACCATGGCCAAATCCATGTTCAGCTCTCCTGGGCTTTCTCTCGCACTTCAAACGAATCTTGACGAGCAACAAGTAGGGGAAGCGAATAGAATGCCTGCTGCAGAGAGCTACGAGCCAAATGTTGGGGCGAGAAGAAGCAGAGAAGAAGAACACGAAAGCAGATCTGGAAGTGATAATATGGAAGGCCCCACTTCCGGCGATGATCAAGACGCCGCCGACATCCCTCCGAGGAAAAAACGCTATCACCGACATACCCCTCAGCAAATACAAGAACTCGAAGCTCTCTTCAAGGAGTGTCCACACCCAGATGAGAAACAAAGACTAGAACTTAGCAGAAGGCTTTCCTTAGAAACCAGACAGGTGAAATTTTGGTTCCAAAATCGAAGAACCCAGATGAAGACCCAGCTGGAGCGCCATGAAAACAGTTTGCTGAGGCAAGAGAACGATAAACTGAGAGCAGAGAACATGTCTATAAGAGAAGCCATGAGGAATCCGATATGTTCAAATTGTGGAGGGCCAGCCATTATAGGCGAGATTTCACTCGAAGAACAACACCTAAGAATTGAAAACGCTCGATTGAAGGACGAACTAGACCGAGTTTGTGCTCTGGCCGGAAAGTTTATTAGCCGACCCATTTCTTCATTAACCAGTCCGATTGGCCCTCCATTGCCGAACTCAAGCTTAGAACTCGGAGTTGGCATCAACGGGTTCGGTGGAATAAGCACCGTGTCTCCTTCAACATTACCGCTAGGGCCTGCAGATTTCGGGATTTCAAGCCAATTAGCCATGGTTACTACGGCGACGACAACATCGGCAACGACTATGACAAGACCATCGGGAGCTTTGGTCGTCGGCGGCGGCGGTGGCGGGCTTGATAGGTCGATAGAGAGGTCTATGTTTCTGGAGCTGGCTTTGGCGGCGATGGACGAGTTAGTGAAGATGGTTCATACAGATGAACCTCTCTGGTTAAGAAGCCTAGAAGAAGGAGGAGGAGGAAGAGAGATTCTGAATCAAGAAGAGTACATGAGAACGTTCAGTAATCCTTGCATTGGAGTGAGACCTAACGGCTTCGTCTCCGAAGCTTCTAGAGAAACTGGAATGGTCATCATCAACAGCTTGGCCCTCGTTGAAACTCTCATGGATTCAAATCGTTGGGCAGAAATGTTCCCTTGTTTGATCGCCAGAACCTCAACCACAGAAGTAATCTCCAGTGGAATAAACGGAACCAGAAACGGTGCACTGCAACTGATGCACGCGGAGCTTCAGGTTCTATCGCCATTGGTGCCAGTTCGAGTGGTGAATTTTCTTCGATTCTGCAAGCAACACGCTGAGGGGGTGTGGGCTGTGGTTGACGTCTCAATTGATAACATTATTCGAGGAGCTTCTCCAGGAGCTGCATGTTTTATGAACTGTAGAAGGCTTCCTTCTGGGTGCGTTGTTCAAGATATGCCAAATGGATACTCCAAGGTGACATGGGTGGAACATGCAGAATACGATGAAAGCCAAGTCCACCAACTCTACAGACCCTTGTTGAGCTCCGGCATGGGTTTCGGTGCTCAACGGTGGGTCACCACCCTACAACGCCAATGCGAGTGCCTGGCCATCTTAATGTCGTCCTCCGACCCTTCTCGGGATCACACCGCTGCCATAACTGCCGGTGGCCGGAGGAGCATGTTGAAGCTAGCGCAGCGAATGACCAACAATTTCTGCGCCGGAGTTTGCGCTTCCACGGTGCACAAGTGGAACAAGCTGAACGCCGGCAACGTGGACGAGGGCGTCCGGGTGATGACTCGAAAGAGCGTGGACGATCCCGGTGAGCCGCCGGGTATAGTTTTGAGCGCAGCGACCTCCGTTTGGCTTCCGGTTTCACCGCATAGGCTGTTCGATTTCCTACGTGATGAACGTCTCAGAAGCGAATGGGACATACTCTCAAACGGTGGGCCCATGCAAGAGATGGCCCACATCGCCAAAGGCCAAGATCCCGGCAACTGCGTCTCCCTCCTACGAGCCAGTGCGATGAATGCAAACCAGAGTAGCATGCTGATACTGCAGGAGACATGTATAGACGCGGCGGGATCGCTTGTGGTGTACGCGCCGGTGGATATCCCGGCCATGCATGTGGTGATGAACGGCGGCGACTCGGCTTACGTGGCGTTGTTGCCGTCCGGTTTCGCTATAGTACCGGATGGACCGGGATCGCGTGGGTCCCAAACGCCGGCGAGCAACGGGAACGCGAACGGAAACGGCGGTGTGAATGAGAGGGTAAGTGGCTCCCTCTTGACGGTGGCTTTTCAAATCCTCGTGAATAGCCTACCTACGGCCAAGCTCACGGTGGAATCGGTGGAGACGGTGAACAACCTCATCTCGTGCACCGTTCAGAAAATAAAGGCCGCTCTTCACTGTGAAAGCTGA 2571 0.522 MSFGGFLDNNWGGSGGGSGGARIVADIPYSNGTNDNTMASGGSISQPRLLSPPTMAKSMFSSPGLSLALQTNLDEQQVGEANRMPAAESYEPNVGARRSREEEHESRSGSDNMEGPTSGDDQDAADIPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLSLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIREAMRNPICSNCGGPAIIGEISLEEQHLRIENARLKDELDRVCALAGKFISRPISSLTSPIGPPLPNSSLELGVGINGFGGISTVSPSTLPLGPADFGISSQLAMVTTATTTSATTMTRPSGALVVGGGGGGLDRSIERSMFLELALAAMDELVKMVHTDEPLWLRSLEEGGGGREILNQEEYMRTFSNPCIGVRPNGFVSEASRETGMVIINSLALVETLMDSNRWAEMFPCLIARTSTTEVISSGINGTRNGALQLMHAELQVLSPLVPVRVVNFLRFCKQHAEGVWAVVDVSIDNIIRGASPGAACFMNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYRPLLSSGMGFGAQRWVTTLQRQCECLAILMSSSDPSRDHTAAITAGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNAGNVDEGVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPHRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDPGNCVSLLRASAMNANQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGSRGSQTPASNGNANGNGGVNERVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHCES 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0580 856 SUPERFAMILY Bet v1-like 614 849 - -
Lele40g0580 856 ProSiteProfiles START domain profile. 346 588 IPR002913 GO:0008289
Lele40g0580 856 ProSitePatterns 'Homeobox' domain signature. 163 186 IPR017970 GO:0000981|GO:0006355
Lele40g0580 856 ProSiteProfiles 'Homeobox' domain profile. 128 188 IPR001356 GO:0003677
Lele40g0580 856 CDD homeodomain 130 188 IPR001356 GO:0003677
Lele40g0580 856 FunFam Homeobox-leucine zipper protein HDG1 118 204 - -
Lele40g0580 856 Coils Coil 182 217 - -
Lele40g0580 856 MobiDBLite consensus disorder prediction 787 802 - -
Lele40g0580 856 FunFam Homeobox-leucine zipper protein GLABRA 2 355 584 - -
Lele40g0580 856 Pfam Homeodomain 131 186 IPR001356 GO:0003677
Lele40g0580 856 MobiDBLite consensus disorder prediction 37 60 - -
Lele40g0580 856 MobiDBLite consensus disorder prediction 94 110 - -
Lele40g0580 856 SUPERFAMILY Homeodomain-like 115 188 IPR009057 -
Lele40g0580 856 CDD START_ArGLABRA2_like 350 584 - -
Lele40g0580 856 Gene3D - 118 204 - -
Lele40g0580 856 SMART START_1 355 585 IPR002913 GO:0008289
Lele40g0580 856 MobiDBLite consensus disorder prediction 82 137 - -
Lele40g0580 856 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 128 853 IPR042160 -
Lele40g0580 856 SMART HOX_1 129 192 IPR001356 GO:0003677
Lele40g0580 856 Pfam START domain 355 585 IPR002913 GO:0008289
Lele40g0580 856 SUPERFAMILY Bet v1-like 348 585 - -
Lele40g0580 856 MobiDBLite consensus disorder prediction 783 802 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0580 Lele-ChrLele40 5117556 5123132 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0580 1 856 Homeobox Transcription Factor Family AT3G61150 64.393 0.0 1049
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele40g0580 START 1.9e-52 CL0209