Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0552 ATGCGGCTAAATCTCCGGCTCTCCATCACCCAATGGCTGGAAAGGAGTGCCATTTCCTCCTTCTGCCACCAAACGGCTTGTTACAGCAGAAGAAGAGCAGGTCAGAAAAATGCCGGCTTATTCAGGAAATCTTCGATGTTCGGCAACCATATACTTTTGAACGGAAAATTAGGCGAATGCATGGTGGTTTCACCCTTGTCCTTCCAAATGGTGCTCATCCTCCTTGCTGCTGGCTCCCGTGGTTGCACTCGCGATCACCTTGTCACCTTCTTCAACGCCAATTCCGTCGATCGGTCTCAATTCCATAACCTCTCAACTTTCCGACGTCATCTTGGCCGTTGGCGATCCTGCTGTTGGCCCTTGTCTGCGTTGCTCCAATGGCTTATGGATCGATCAATCCCTTACTCTCAAGCCCCTCATTATAGAGCCGCTCTGAACGCAGTGGACTTTCAGACAAAGGTAATCAATGGAGAAGCCCTACATTTTGCTTTGCTTCAGTGGAGCTTCTGCAGACATCGTCAAAAAATGGGTGGGGAGGTTAAGACAATTGTTCCAGAGTCTGTGTTGAAGAAGAGAAAGAGAGAAGAGGAATGGGCATTGGCCAAGGCACAGGAGACTGAAGCTGCAAAAAAGAAGAGAGCTGAGAGCCGAAAGTTGATCTACAACAGAGCTAAGCAGTATGCCAAGGAGTATGAGGAGCAGGATAAGGAGTTGATTAGATTGAAACGTGAGGCAAAGCTGAAAGGTGGATTTTATGTTGATCCAGAGGCTAAACTATTGTTTATTGTTCGCATCCGTGGTATTAATGCCATGCACCCAAAGACAAGGAAGATCTTGCAGCTCTTGCGTTTGAGGCAGATCTTCAATGGCGTGTTTCTTAAAGTTAACAAGGCCACAATGAACATGCTTCACAGGGTTGAACCTTATGTGACCTATGGGTACCCAAACTTGAAGAGTGTAAGAGAACTTATTTACAAGAGGGGCTATGGTAAGATCAACAAGCAGAGAATTGCTTTAACTGACAATTCCATCATTGAGCAGGCACTGGGCAAGTATGGAATCATATCTGCTGAAGATCTTATCCATGAGATCATAACAGTTGGACCTCACTTTAAGGAGGCCAACAACTTCCTTTGGCCCTTTAAACTCAAGGCACCTCTGTGTGGACTAAAGAAGAAGAGAAACCACTATGTTGAAGGTGGCGATGCTGGAAACCGTGAGAATTACATCAACGAGCTCATTAGGAGAATGAACTAG 1257 0.4598 MRLNLRLSITQWLERSAISSFCHQTACYSRRRAGQKNAGLFRKSSMFGNHILLNGKLGECMVVSPLSFQMVLILLAAGSRGCTRDHLVTFFNANSVDRSQFHNLSTFRRHLGRWRSCCWPLSALLQWLMDRSIPYSQAPHYRAALNAVDFQTKVINGEALHFALLQWSFCRHRQKMGGEVKTIVPESVLKKRKREEEWALAKAQETEAAKKKRAESRKLIYNRAKQYAKEYEEQDKELIRLKREAKLKGGFYVDPEAKLLFIVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKINKQRIALTDNSIIEQALGKYGIISAEDLIHEIITVGPHFKEANNFLWPFKLKAPLCGLKKKRNHYVEGGDAGNRENYINELIRRMN 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0552 418 Gene3D Antithrombin, subunit I, domain 2 41 159 IPR042178 -
Lele40g0552 418 Pfam Ribosomal L30 N-terminal domain 184 255 IPR012988 -
Lele40g0552 418 PANTHER 60S RIBOSOMAL PROTEIN L7 182 418 IPR039699 -
Lele40g0552 418 Gene3D - 259 361 IPR036919 -
Lele40g0552 418 Gene3D - 362 418 IPR036919 -
Lele40g0552 418 TIGRFAM uL30_euk: 60S ribosomal protein uL30 185 418 IPR005998 GO:0000463|GO:0003735|GO:0022625
Lele40g0552 418 Coils Coil 224 248 - -
Lele40g0552 418 SUPERFAMILY Ribosomal protein L30p/L7e 259 418 IPR036919 -
Lele40g0552 418 FunFam 60S ribosomal protein L7 259 363 - -
Lele40g0552 418 ProSitePatterns Ribosomal protein L30 signature. 278 310 IPR018038 -
Lele40g0552 418 CDD Ribosomal_L7_archeal_euk 259 418 IPR035808 -
Lele40g0552 418 SUPERFAMILY Serpins 58 152 IPR036186 -
Lele40g0552 418 FunFam 60S ribosomal protein L7 364 418 - -
Lele40g0552 418 Pfam Ribosomal protein L30p/L7e 260 310 IPR016082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0552 Lele-ChrLele40 4658942 4664732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0552 178 418 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 84.232 1.10e-151 427