Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0542 ATGACAGTACTTATCCCCACCGCAATTACAGGATGTCCAACCCTGTTTCAACCTCATTGTTCAAAGAATGTCAATCCCACGAGACCGGTTCTTCTAAACAAGCGCTGCAAGGCACCAACGTACGAACTTTTTGTTCCTCGTAAGCCTTCCAAGTTCCAACCTCGGTTGGTGTCTTGCCTTGTCGGGTCTCTTGTCTTATTTCCAATGAGGCATCTCTGGTTGCTTCTTCTTCCTCTATGCTTTTCTTCCTTGTTATGCTCTGTTTATGCTTTGAGCTCTGATGGGGTGGCTCTATTGTCACTCTTGAGGCACTGGACTCCTGTGCCTCATCCTATAAAATCCACCTGGAATCTCTCAGATTCCTTTCCTTGCTCTTGGCTTGGAATCCAGTGCGACCATTACCACAATGTGATCTCCCTCAACCTCACTGATTATGGGATTGAGGGTAAAATAGGACCTGAGATTGGACTTTTGAGTCACTTACAGAGCCTTGTATTGATCAATAATGGCTTCTCTGGAAAAATTCCTTCTGAGTTAGGGAATTGTAGTCTTTTAGAATACCTAGAACTTTATGGAAACAACTTCAGTGGAAAAATACCTATGACCTTCAAAAACTTGCAGAATTTGAATTATTTCAGCCTTCCTTATAATCAACTCACTGGTCAAATCCCTGAATTCATCCCCCAAATCCCTAACCTGCAATTTGTTGACTTGTCTTTTAACTCTCTCACTGGTTCAGTTCCTTCAGAAATAGGAAACATGAGTGAGCTTTTGATCTTGTATCTACACAATAATCAGTTGTCTGGTGAAATTCCTTCATCAATTGGGAATTGTAGTAAATTGCAGGACTTGACTTTGAATGAGAATAAGTTTCATGGAACTCTTCCAGAGACTCTTAACAATCTCCATGATATTCTTTATTTGAACTTGGCTTCTAATAATCTTGGTGGTACTGTTCCATTGGGTTCTGGAAATTGTAAGAATTTGTCTTTTTTGGATCTGTCATATAATGTATTCAGTGGAGATATTCCTTCAAGCTTGGCGAATTGTAGTGGCTTAACGACATTTTCTGCTGTTAGCAGTGGCTTTACTGGCAGTATTCCATCCTCCATCGGTTTGCTTCGCGAGCTTTCCCTTTTATGGCTTCCAGTGAATCATTTGTCAGGGAAAATACCTCCGGAGATTGGCAATTGTAAGTCTTTGACAAAGGTGCATTTGTATTCCAATCAACTCGAGGGAGAAATTCCTAGTGAGTTGGGAGAGTTGGGTGAATTGCAGGATCTTGAATTATTTTCCAACCGTTTGACCGGCGAAATTCCTCTCGGTGTTTGGAAGATTCAAAGTCTAGAGCAAATCCACGTGTACAATAATAGCCTCTCTGGGGAGCTACCTTTGGAGATGACAGAGCTCAAGCATCTGAAGAATATCTCATTGTTTAACAACCACTTCTCCGGAGTGATACCTCAAACTTTGGGAATCAAAAGCCGATTAGTACTGCTGGACTTAACGAATAATAAGTTCACCGGTAACATCCCACCAAATCTTTGTTCTGGAAAGAAATTAACTTTGCTGACTTTGGGGTTTAATCAGCTTCAAGGTAGCATACCTCCAGATGTAGGAATGTGTACAACTCTTACAAGGTTGATTCTCGAAGAAAATAATTTTACGGGGCCCATACCGGACTTTGAATACAATTCGAATCTCACTTTCATGGATATCAGTGGAAACAATATCAATGGCTCAATCCCACCAAGTTTGGGAAATTGCTCAAATGTCACTGATTTAATTCTGTCGAATAACAACCTTGCAGGGCATATACCTCGGGAGCTAGGTCGCCTTGTAAACCTGAAGACTCTGCATCTTGATCACAACCACTTGGAAGGTCCTTTGCCACCTGAGCTGTCAAAATGTACTAAAATGGACAGTTTTGATGTGGGATCCAATTTCCTGAATGGTTCATTTCCACCGACTTTGAGGAGCTGGACGGCACTAACCACATTAATTTTAAGAGAGAATCGTTTTCATGGTGGCATCCCGGATTTCTTGTCAGAAATTAACAATCTCTCTGAGCTACAGCTTGGTGGAAACATGTTTGGAGGAAAGATTCCAGGATCAATCGGGGCATTGCAGAATCTGCGCTATGGGTTGAATCTAAGTGCTAATGGGCTGATTGGTGAAATTCCTCAAGAGATGGGAAAATTAATGAATCTGGTAAATCTGGATCTATCTCAAAACAATTTGACTGGAAGCATAGGAGTCCTCGCTGAGCTTTCTTCATTACTTAAAGTCAATGTTTCATACAATTCCTTCACTGGCCCTGTACCGGAGAAGCTGATGAAGCTGTTTAATTCTGATTCTTCATCATTTTCGGGAAATCCCGGCCTGTGTATCCGTTGTTCATCATCAAACAGATCAGATTGCTATCAGAGCAGCCGCCATCTAAAGCCATGTGATGATAGATTGACAAACAAGAAAGGGCTTAGTAAAGTACAAGTAGCAATAATAACACTTGGATCATCAATATGTTTTGTTCTTTTGTTGCTGTTAGTAATCTATATGTGTGTACGTGGTGGAAAATCGAAGCAGGGAATTGAGATTGCCGCCAAAGAAGGCACGTCCTCTCTTCTTAACAAAGTGATGGAGGCTACTGATAACCTAAGCGACGGGTTTATCATCGGTAGAGGGGCTCATGGAGTAGTTTATAAAGCTTCAATAGATGCAGGCCAAGTTTTCGCTGTGAAGAAGCTTGCATTTTCTGGGAACAAAGGCAAGAGCATGGATAGAGAAATTCAAACCCTCGGAATGATTAGGCACCGAAATCTGGTCAAATTGGAAGACTTTTGGTTGAGAAAAGACTTTGGTCTGATCTTGTACCCCTACATGACAAATGGAAGCCTTCATGAAGTCTTGCACGAAAAGCATCCAGCACCATCCTTAGAGTGGAACGTCCTATCACCATCTATATTTGTCCCGGGCACTGTAGGGTATATTGCACCAGAGAAAGCAAATACGACAGCAAACAATAGAGAATCTGATGTATATAGTTATGGGGTAGTTTTGCTTGAGTTGATAACCAGAAAGAAAGCAGTGGATCCATCATTCAAGGAGGGAGAGGGAGTTGATATAGTAAGCTGGGTTAGAACTCTGTGGGTTGAAACAGAAGATATTCATAAGATTGCTGATTCAAGTCTTGCAGGGCAGTTTCCGGATTCAAATGTTCTTGAACAAGCTACCAAAGTGCTTTTGGTGGCCCTGAAATGCACCCAGAATGATCCACGTGCGAGACCCACAATGAGAGATGTTATCAAGCAATTAGAAGATGCTAATCCGAGGATAAGGAGTAAAAAGCTCCCAAGTTCCCACTCCTTAATCCGTAGTTGA 3381 0.4164 MTVLIPTAITGCPTLFQPHCSKNVNPTRPVLLNKRCKAPTYELFVPRKPSKFQPRLVSCLVGSLVLFPMRHLWLLLLPLCFSSLLCSVYALSSDGVALLSLLRHWTPVPHPIKSTWNLSDSFPCSWLGIQCDHYHNVISLNLTDYGIEGKIGPEIGLLSHLQSLVLINNGFSGKIPSELGNCSLLEYLELYGNNFSGKIPMTFKNLQNLNYFSLPYNQLTGQIPEFIPQIPNLQFVDLSFNSLTGSVPSEIGNMSELLILYLHNNQLSGEIPSSIGNCSKLQDLTLNENKFHGTLPETLNNLHDILYLNLASNNLGGTVPLGSGNCKNLSFLDLSYNVFSGDIPSSLANCSGLTTFSAVSSGFTGSIPSSIGLLRELSLLWLPVNHLSGKIPPEIGNCKSLTKVHLYSNQLEGEIPSELGELGELQDLELFSNRLTGEIPLGVWKIQSLEQIHVYNNSLSGELPLEMTELKHLKNISLFNNHFSGVIPQTLGIKSRLVLLDLTNNKFTGNIPPNLCSGKKLTLLTLGFNQLQGSIPPDVGMCTTLTRLILEENNFTGPIPDFEYNSNLTFMDISGNNINGSIPPSLGNCSNVTDLILSNNNLAGHIPRELGRLVNLKTLHLDHNHLEGPLPPELSKCTKMDSFDVGSNFLNGSFPPTLRSWTALTTLILRENRFHGGIPDFLSEINNLSELQLGGNMFGGKIPGSIGALQNLRYGLNLSANGLIGEIPQEMGKLMNLVNLDLSQNNLTGSIGVLAELSSLLKVNVSYNSFTGPVPEKLMKLFNSDSSSFSGNPGLCIRCSSSNRSDCYQSSRHLKPCDDRLTNKKGLSKVQVAIITLGSSICFVLLLLLVIYMCVRGGKSKQGIEIAAKEGTSSLLNKVMEATDNLSDGFIIGRGAHGVVYKASIDAGQVFAVKKLAFSGNKGKSMDREIQTLGMIRHRNLVKLEDFWLRKDFGLILYPYMTNGSLHEVLHEKHPAPSLEWNVLSPSIFVPGTVGYIAPEKANTTANNRESDVYSYGVVLLELITRKKAVDPSFKEGEGVDIVSWVRTLWVETEDIHKIADSSLAGQFPDSNVLEQATKVLLVALKCTQNDPRARPTMRDVIKQLEDANPRIRSKKLPSSHSLIRS 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0542 1126 Gene3D Ribonuclease Inhibitor 92 247 IPR032675 -
Lele40g0542 1126 Pfam Leucine rich repeat N-terminal domain 92 132 IPR013210 -
Lele40g0542 1126 SUPERFAMILY L domain-like 562 796 - -
Lele40g0542 1126 SUPERFAMILY RNI-like 284 603 - -
Lele40g0542 1126 Gene3D Ribonuclease Inhibitor 542 813 IPR032675 -
Lele40g0542 1126 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 519 805 - -
Lele40g0542 1126 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 402 491 - -
Lele40g0542 1126 Gene3D Transferase(Phosphotransferase) domain 1 986 1120 - -
Lele40g0542 1126 Pfam Protein tyrosine and serine/threonine kinase 994 1105 IPR001245 GO:0004672|GO:0006468
Lele40g0542 1126 FunFam Leucine-rich repeat receptor protein kinase EMS1 319 401 - -
Lele40g0542 1126 Pfam Protein kinase domain 891 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele40g0542 1126 FunFam Nuclear pore complex protein NUP107 91 232 - -
Lele40g0542 1126 Gene3D Ribonuclease Inhibitor 303 378 IPR032675 -
Lele40g0542 1126 ProSiteProfiles Leucine-rich repeat profile. 736 758 IPR001611 GO:0005515
Lele40g0542 1126 ProSitePatterns Protein kinases ATP-binding region signature. 892 915 IPR017441 GO:0005524
Lele40g0542 1126 SUPERFAMILY Protein kinase-like (PK-like) 874 1105 IPR011009 -
Lele40g0542 1126 Gene3D Ribonuclease Inhibitor 248 302 IPR032675 -
Lele40g0542 1126 ProSiteProfiles Protein kinase domain profile. 886 1126 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele40g0542 1126 SUPERFAMILY L domain-like 94 356 - -
Lele40g0542 1126 Gene3D Transferase(Phosphotransferase) domain 1 870 985 - -
Lele40g0542 1126 SMART LRR_typ_2 613 637 IPR003591 -
Lele40g0542 1126 SMART LRR_typ_2 158 182 IPR003591 -
Lele40g0542 1126 SMART LRR_typ_2 254 278 IPR003591 -
Lele40g0542 1126 SMART LRR_typ_2 422 446 IPR003591 -
Lele40g0542 1126 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 550 1105 - -
Lele40g0542 1126 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 233 298 - -
Lele40g0542 1126 Gene3D Ribonuclease Inhibitor 379 538 IPR032675 -
Lele40g0542 1126 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 853 960 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0542 Lele-ChrLele40 4559473 4566737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0542 82 1114 Receptor kinase-like Gene Family AT1G73080 48.730 0.0 922
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lele40g0542 PK_Tyr_Ser-Thr 3.7e-07 CL0016