Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0525 ATGAAGCTCACGGTGAAGACTTTGAAAGGAAGAAATTTCGAAATCAGGGTCCAGCCCTCCGACACTGTTCGTAATCTCATTGCGCCTTCACTTCTTTTTCCGTGTTCCCTTTTGGCTCTCAATTTTGCTGTTTGCGTGTTATCTGAAATTGCACTTCTTTGTCCACCAAAGGTCATGGCAGTTAAGAAGAACATTGAAGATGTACAAGGAAAATATAATTATCCATGTGGACAGCAATTGCTGATTCACAATGGCAAGGTGTTGAAAGATGAGACTACACTAGCAGAGAACAATGTCTCTGAACATGGATTCATTGTTGTAATGCTTAGCAAGAAGAAGACCTTCAGTTCAGCTGGGGCTTCATCCACTCAGCCTGCTAGTAATACAACTACAACTGTATCAGCATCAAATTCCACTCCAATGTCCGATCCACCAGTACAAACTCAGGCTGCAAACAACAGAACATCTTCCACAGATGCCACAATAGCGAAGTATAACCTTTTCCTATATGAACAATTAGATAATTATGGTGAGGCTGCTTCAAATTTAGTTGCCGGTACTAATCTTGAACAGACTATTCAACAAATTATGGACATGGGTGTTAGTCAGACAACTGAAACAAGTGAGGCTACTGCAAGAGCTGCTCCTGGAGCACCTAACTCATCTCCCTTAAACATGTTTCCTCAGGAGGCACTCGGTGCTGATGCTGGACTTGGATCTCTTGACTTCCTTAGAAACAATCCCCAGGTGGGCTTGTTGTTTATCAACAATAGTTTTCTTAATGCTAGAAATCATTTTGTTCTGCATGCTTATGGGTGGAAATTTTATCAAGCACTTGGTTCTTTATCTGCTTTTCGGTTTCAAGCATTGCGGTCAATGGTGCATTCGAATCCACAAATCTTGCAGCCTGTGCTTTGGGAGTTGGGAAAGCAGAATCCCAATCTTTTAAGATTGATTCAAGAACATCATTCGGAGTTTCTTCCGTTAATTCATGGACCAGTTGAAGGTTCTGAAGGGGACATATTTGACCAGCCTGAGCTAGACATGCCTCATTCTATCAATCTTACACCAGCCGAGCAGGAAGCAAGTGGAAGGCTTGAGGGCATGGGATTTGATAGGGCCTCAGTTATAGAGGCATTTTTGGCATGTGACCGGGATGAGCAGTTGGCAGCCAACTATTTGTTGGAGAATGCTGGAGATTTTGAGGATTGA 1212 0.4266 MKLTVKTLKGRNFEIRVQPSDTVRNLIAPSLLFPCSLLALNFAVCVLSEIALLCPPKVMAVKKNIEDVQGKYNYPCGQQLLIHNGKVLKDETTLAENNVSEHGFIVVMLSKKKTFSSAGASSTQPASNTTTTVSASNSTPMSDPPVQTQAANNRTSSTDATIAKYNLFLYEQLDNYGEAASNLVAGTNLEQTIQQIMDMGVSQTTETSEATARAAPGAPNSSPLNMFPQEALGADAGLGSLDFLRNNPQVGLLFINNSFLNARNHFVLHAYGWKFYQALGSLSAFRFQALRSMVHSNPQILQPVLWELGKQNPNLLRLIQEHHSEFLPLIHGPVEGSEGDIFDQPELDMPHSINLTPAEQEASGRLEGMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0525 403 PRINTS DNA repair protein Rad23 signature 370 384 IPR004806 GO:0006289
Lele40g0525 403 PRINTS DNA repair protein Rad23 signature 385 400 IPR004806 GO:0006289
Lele40g0525 403 PRINTS DNA repair protein Rad23 signature 353 369 IPR004806 GO:0006289
Lele40g0525 403 PRINTS DNA repair protein Rad23 signature 304 326 IPR004806 GO:0006289
Lele40g0525 403 SMART uba_6 359 396 IPR015940 -
Lele40g0525 403 SUPERFAMILY UBA-like 339 400 IPR009060 GO:0005515
Lele40g0525 403 SUPERFAMILY Ubiquitin-like 57 125 IPR029071 -
Lele40g0525 403 SMART ubq_7 1 110 IPR000626 GO:0005515
Lele40g0525 403 Gene3D - 1 115 - -
Lele40g0525 403 Pfam UBA/TS-N domain 365 394 IPR015940 -
Lele40g0525 403 SUPERFAMILY XPC-binding domain 286 341 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lele40g0525 403 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 392 - -
Lele40g0525 403 Gene3D - 350 398 - -
Lele40g0525 403 Gene3D - 281 334 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lele40g0525 403 ProSiteProfiles Ubiquitin domain profile. 1 114 IPR000626 GO:0005515
Lele40g0525 403 CDD Ubl_Rad23 1 109 - -
Lele40g0525 403 Pfam Ubiquitin family 58 111 IPR000626 GO:0005515
Lele40g0525 403 Pfam XPC-binding domain 286 333 IPR015360 GO:0003684|GO:0006289|GO:0043161
Lele40g0525 403 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 357 397 IPR015940 -
Lele40g0525 403 MobiDBLite consensus disorder prediction 117 155 - -
Lele40g0525 403 FunFam UV excision repair protein RAD23 homolog 350 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0525 Lele-ChrLele40 4416751 4422324 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0583 37 4797030 4801490 Lele40g0525 40 4416751 4422324 hybridization
Lele38g0552 38 4633092 4637875 Lele40g0525 40 4416751 4422324 hybridization