Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0523 ATGACGGAAGCATGCAAAAAATCCTCCATTTTATTAGGTCAGTCATATAATTCTCTCTACGTCAATCCTCTCACTGAACTCAGGCACAGCCGTAGTTGCAGCGACAGTAGCAGCTTAGCTTCAAAAGGTCACAAATGTGAAGATTTCAAGCAAAAAAGAAAAGTTTCTACTGATAATAAAGAGAATGTCGTCACGCCCAACAAGAAGAAAGATGGAACTCGCTTTTGTGACAAGGAAAATGCAGTGCCTGCAAAAGGGTCATCATTATCTTCTTCTTTGCCTAATAAACACTTTTCAAAGTCCAAGTCTTTGTCCACAGAAAGGATTTTGAAGCCAAACTCGCTTCAGTTCTGTATGCAAATGAACGAGCCTGAAAAGGCTTTTGGATGCAAGATATGGGATAATAATGTATGTTCTGAAAATTTGAGCTCTTTAAAGATTTGGGATTTCTCTGATTCAGAAGCAGCCCCAGCTTCTTCCTGGTCAACCTTGCCCAATAAGTCTTTGATCTGTAGACCGTTGCCTATAGATATTGGAAGGTGTACATGCTTCATTGTCAAGGAAGCAAAGCCAGAAGGACTATCTGGGGGCACTATGTATTCGCTTTATACTTATGAAGGTCAGGGTCGCCAGAATAGGAAACTAGCCGTGGCTTATCACAAGAGGAGAAATGGGAGGTCTCAGTTCATTGTAGCTCAGAATGTAAAAGGTCTCTTGTTCAATTCAGATGATAGTTTCCTTGGAACAGTAACGGCTAACCTCCTGGGTTCTAAATACCAAATTTGGGATCAGTTTGTTTGGAAGCAGGGATATCGTCATAATTCACATGATAAACAGCCAAAACCACCTCTTACTGTTGTAATGTTTATACCTACAGCAGCAACATGTACAGGAAGCTACAGAAGCATGAGAGCATATGTACCCAAGCATCAATCTATGTCACTAAAGAACATAACCCAGGTACAACATATCAAAGGACTGCCCATAGATTGGGAGGGAAAGTTGGACAAAGTCCATCAACTGTTCTCAAAGGATCCACTTTACAACAAGACTTCAAAGCAATTTGAACTTGACTTTAAAGATAAAGGAAGAGCAGAACTTCGAATCCAAAGATCGGTAAAAAATTTCCAGCTGACTTTGGAGGAGAATGGGAAGCAGACAATTCTTCAACTGGGTAGAATCGGAAAGTCAAAATTTGTTATGGATTACAGATATCCTTTGACAGGTTACCAGGCGTTCTGCTTAAGTTTAGCTTCGATTGATACAAAGCTCTGTTGCTCTAGTTCTATCATATATTTGCTTGTTTCAGTTGAGAAGCCTTTATTGTATGTAGCTGGATAG 1341 0.4004 MTEACKKSSILLGQSYNSLYVNPLTELRHSRSCSDSSSLASKGHKCEDFKQKRKVSTDNKENVVTPNKKKDGTRFCDKENAVPAKGSSLSSSLPNKHFSKSKSLSTERILKPNSLQFCMQMNEPEKAFGCKIWDNNVCSENLSSLKIWDFSDSEAAPASSWSTLPNKSLICRPLPIDIGRCTCFIVKEAKPEGLSGGTMYSLYTYEGQGRQNRKLAVAYHKRRNGRSQFIVAQNVKGLLFNSDDSFLGTVTANLLGSKYQIWDQFVWKQGYRHNSHDKQPKPPLTVVMFIPTAATCTGSYRSMRAYVPKHQSMSLKNITQVQHIKGLPIDWEGKLDKVHQLFSKDPLYNKTSKQFELDFKDKGRAELRIQRSVKNFQLTLEENGKQTILQLGRIGKSKFVMDYRYPLTGYQAFCLSLASIDTKLCCSSSIIYLLVSVEKPLLYVAG 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0523 446 Gene3D Tubby Protein; Chain A 163 427 IPR025659 -
Lele40g0523 446 PRINTS Tubby superfamily signature 246 270 IPR000007 -
Lele40g0523 446 PRINTS Tubby superfamily signature 405 427 IPR000007 -
Lele40g0523 446 PRINTS Tubby superfamily signature 384 403 IPR000007 -
Lele40g0523 446 PRINTS Tubby superfamily signature 341 358 IPR000007 -
Lele40g0523 446 Pfam Tub family 172 422 IPR000007 -
Lele40g0523 446 SUPERFAMILY Tubby C-terminal domain-like 158 426 IPR025659 -
Lele40g0523 446 PANTHER TUBBY-RELATED 47 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0523 Lele-ChrLele40 4406128 4408982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0523 58 321 TUB Transcription Factor Family AT1G16070 52.465 1.34e-88 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele40g0523 Tub 1.2e-39 CL0395