Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0504 ATGGATAATAATGAAGAGATTCCTTCAGCACCCACAACACCAGGGACTCCTGGTGGACCTCTTTTTGGAGGTTTCAAGTCTGATCCGAGAAGTAATGAGAATGGCTATGCAAGGAAGAAATCGCTTCTCAAGAGTTGTAGGTGTTTCAGTGTTGAAGAATGGAATTTAGAAGAGGGAGCTTTGCCCACTGTCTCTTGCTCTTTGCCACCCCCTCCCATCCCTCTTGCAAGAAAGGTAGGAGCTGAGTTTGTAGGCACTCTGATTCTGATGTTTGCTGGGACAGCCGCTGCTATAGTGAACCAGAAGACACAAGGCGCCGAGACTCTCATAGGCTGCGCCGCCACCACTGGTCTCACTGTCATGATCGTCATCCTCTCCACCGGCCACATCTCCGGCGCTCATCTCAACCCCGCCGTCACCGTCTCCTTTGCTGCACTGAAGCACTTCCCATGGAAACATGTTCCTGTGTACATTGGAGCACAAATAATGGCGTCAATATGTGCAGCATTTGCCCTGAAGGGTATATTTCATCCCTTCATGAGTGGAGGAGTTACTGTTCCTTCAGTAGGATATGGCCAAGCCTTTGCTTTGGAGTTCATCATCAGCTTTAATCTCATGTTTGTCGTCACTGCAGTAGCCACCGACACAAGAGCCGTAGGAGAGCTTGCGGGAATCGCAGTGGGAGCCACTGTCATGCTCAACATCCTTATCTCAGGGCCAGCAACAGGAGGGTCAATGAACCCAGTGAGAACACTAGGGCCAGCAATAGCAGCAAATAACTACAAAGGCATATGGCTGTATCTGATAGCTCCCATATTTGGAGCTCTGAGTGGAGCAGGCACTTACACTTTAGTGAAGCTCACTGATGAACAAGAAGAAGAGGCCAAGGCTACTACTACTGCTTCTGCCCCTGGTAGCTTCAGAAGATGA 930 0.4957 MDNNEEIPSAPTTPGTPGGPLFGGFKSDPRSNENGYARKKSLLKSCRCFSVEEWNLEEGALPTVSCSLPPPPIPLARKVGAEFVGTLILMFAGTAAAIVNQKTQGAETLIGCAATTGLTVMIVILSTGHISGAHLNPAVTVSFAALKHFPWKHVPVYIGAQIMASICAAFALKGIFHPFMSGGVTVPSVGYGQAFALEFIISFNLMFVVTAVATDTRAVGELAGIAVGATVMLNILISGPATGGSMNPVRTLGPAIAANNYKGIWLYLIAPIFGALSGAGTYTLVKLTDEQEEEAKATTTASAPGSFRR 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0504 309 Pfam Major intrinsic protein 76 282 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele40g0504 309 PANTHER AQUAPORIN NIP2-1 43 291 IPR034294 -
Lele40g0504 309 CDD MIP 77 285 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele40g0504 309 ProSitePatterns MIP family signature. 134 142 IPR022357 -
Lele40g0504 309 MobiDBLite consensus disorder prediction 1 32 - -
Lele40g0504 309 FunFam Aquaporin NIP2-1 65 297 - -
Lele40g0504 309 SUPERFAMILY Aquaporin-like 74 291 IPR023271 -
Lele40g0504 309 PRINTS Major intrinsic protein family signature 153 172 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele40g0504 309 PRINTS Major intrinsic protein family signature 265 285 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele40g0504 309 PRINTS Major intrinsic protein family signature 228 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele40g0504 309 PRINTS Major intrinsic protein family signature 197 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele40g0504 309 PRINTS Major intrinsic protein family signature 77 96 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele40g0504 309 PRINTS Major intrinsic protein family signature 116 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele40g0504 309 Gene3D Glycerol uptake facilitator protein. 72 300 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0504 Lele-ChrLele40 4270062 4273479 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0504 3 309 Major Intrinsic Protein MIP AT1G80760 75.641 2.35e-165 460