LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele40g0493	ATGGATGGTTGCAAACAATCCTCCATATCGGCCCAGTCATACAATTCTCGCTATGTCAATCCCCTCACTGAGATCAGGCATAGCCGTAGCTGTAGCTGCGACTATGGCCGTTTATCTAACAAAGGTGACGACTTTGATTTCGCTCACCGGGGCATGAACATCTTTATGGATAACAAGGAGAATGGGACGCCTAACAAGAAAGAAATTGTAGTTTCTTCTTCTGGTGATGATGACAAGGAAAACGCTGTGTCTAAGAAGTTCTCGAATTCTAGGACTTTGTCTACAGATAGGATCTTGAAGCCTACTTCGCTTCAGTTCTGCACGAAAATGAATGATTATTCTGAAAAGGCGTTTGGGTCTAAGATATGGGATCGTTTTGATTCGGAGAATTCGAGCTCTATGAATGTTTGGGACTTTTCTGATTCTGAGGCAGCTCCAGCTTCATCGTGGTCAACTCTGCCAAACAAGTCTTTGATCCGTAGACCATTGCCCGTTGATATTGGAAGATGTACATGTGTTATTGTGAAGGAAGCATCGCCAGAAGGACTATCTGGGGGCACATTTTTTTCTCTTTATACCTATGAAGGCAAAGGACGACAGAATAGGAAATTGGCTGTGGCTTACCATAAGAGGAGAAATGGGAGGTCTCAATTCACCATAGCTCAGAATGTAAAAGGACTTTTGTCCAATTCAGATGATAGTTTTCTTGGAACAGTGATAGCCAACTTCATGGGTTCAAAATACCACATATGGGATCAGGGATATCGCCATGATTGCCGGGGTAAACAGCCAAAACCGCCTCTTGCTGTGGTGGCATTCATACCAACTATAGCAACATGTACAGGAAGTTACAGAAGCATGAGGGCATACGTACCCAAACATCAATGTATGTCACTGAAGAACACAAATCAGGTACAACATATCAAAGGACTGCCAACAGATTGGGAGGAAAAGGTGGACAACGTCCATCAACTATTCTCAAGAGTACCAATTTATAACAAGATTTCAAAGCAGTTTGAACTGGACTTCAGAGATAAAGGAAGATCAGGACTTCAGATCCAGGCATCAAATAAAAATTTCCAGCTGAGTTTGGAGGAGAATGGGAAGCAAACAATTCTGCAGTTAGGAAGGGTGACAAAATCAAAGTTTGTTTTGGATTACAGATATCCTCTGACAGGTTACCAAGCATTCTGCATATGCTTGGCTTCCATTGATACAAAGCTTTGCTGCACAGTGTAG	1239	0.4245	MDGCKQSSISAQSYNSRYVNPLTEIRHSRSCSCDYGRLSNKGDDFDFAHRGMNIFMDNKENGTPNKKEIVVSSSGDDDKENAVSKKFSNSRTLSTDRILKPTSLQFCTKMNDYSEKAFGSKIWDRFDSENSSSMNVWDFSDSEAAPASSWSTLPNKSLIRRPLPVDIGRCTCVIVKEASPEGLSGGTFFSLYTYEGKGRQNRKLAVAYHKRRNGRSQFTIAQNVKGLLSNSDDSFLGTVIANFMGSKYHIWDQGYRHDCRGKQPKPPLAVVAFIPTIATCTGSYRSMRAYVPKHQCMSLKNTNQVQHIKGLPTDWEEKVDNVHQLFSRVPIYNKISKQFELDFRDKGRSGLQIQASNKNFQLSLEENGKQTILQLGRVTKSKFVLDYRYPLTGYQAFCICLASIDTKLCCTV	412

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele40g0493	412	Pfam	Tub family	160	406	IPR000007	-
	Lele40g0493	412	PANTHER	TUBBY-RELATED	99	409	-	-
	Lele40g0493	412	Gene3D	Tubby Protein; Chain A	152	411	IPR025659	-
	Lele40g0493	412	PRINTS	Tubby superfamily signature	235	259	IPR000007	-
	Lele40g0493	412	PRINTS	Tubby superfamily signature	368	387	IPR000007	-
	Lele40g0493	412	PRINTS	Tubby superfamily signature	389	411	IPR000007	-
	Lele40g0493	412	PRINTS	Tubby superfamily signature	348	364	IPR000007	-
	Lele40g0493	412	SUPERFAMILY	Tubby C-terminal domain-like	147	411	IPR025659	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele40g0493	Lele-ChrLele40	4108244	4111899	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele40g0493	57	305	TUB Transcription Factor Family	AT1G16070	53.846	1.88e-90	273

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	TUB	Lele40g0493		Tub	6.8e-40	CL0395