Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0488 ATGGCAGGAGGCAGCCTCGACGAGATCAAGAAGGAGAATGTCGACCTCGAGCGAGAAAGCAAGCTTCTAAAATTCTTGGGCTTTATGTGGAATCCTCTCTCATGGGTCATGGAAGCAGCTGCTATCATGGCTATCGCTTTGGCCAATGGAGGGGGGCAACCGCCAGATTGGCAAGATTTTGTAGGAATTGTGGCATTGCTCATCATTAACTCAACAATTAGTTTCATTGAAGAAAACAATGCAGGGAATGCTGCAGCAGCACTTATGGCAAGCCTGGCATTAAAAACTAAGGTTTTGAGGGATGGAAAATGGACTGAGCAGGATGCATCTGTGTTGGTACCTGGAGACATAATCAGCATCAAATTAGGAGACATTATCCCTGCGGATGCTCGTCTCTTGGAAGGAGATCCTTTAAAGATTGATCAGTCTGCACTTACTGGTGAGTCCTTGCCGGTTGCAAAGAACTCGTCTGATGAAGTCTTCTCGGGATCGACTGTGAAGCAAGGAGAGATCGAGGCTATTGTGATTGCTACTGGGGTTCACACCTTCTTTGGTAAAGCTGCTCACTTGGTTGATAGCACTAACCAAGTAGGCCACTTTCAAAAGGTGTTGACTGCCATTGCCATTGAGGAGCTGGCTGGGATGGATGTTCTATGCAGTGACAAGACCGGCACCTTAACACTCAACAAGCTCACAGTTGACAAGACCTTGGTTGAGGTCTTTGTAAAAGATATTGACAAGGACACTTTGGTATTGCTTGGAGCTAGAGCCTCAAGGGTGGAGAATCAAGATGCTATTGATGCTTGTATTGTTGGAATGTTGGGTGACCCGAAGGAGGCTAGAGATGGCATCACAGAGGTGCATTTCCTTCCCTTTAATCCAGTGGACAAGCGTACGGCCATAACATACATTGACTCCGCAGGCAATTGGCATAGAGTAAGCAAAGGAGCACCAGAACAGATTGTAGAACTCTGCAATGTCAAAGAAGATATAAAGAAAAAAGTTCATTCCATTATTGATAAGTTTGCTGATCGTGGTCTGCGTTCTCTTGCCGTTGCAAGACAAGAAGTGCCAGAAAAGAACAAGGAGAGTCCAGGAGCACCATGGCAGTTCGTGGGTCTCTTACCACTTTTCGATCCTCCAAGGCATGACAGTGCAGAGACCATCAAACGTGCTCTCCATCTTGGAGTGAATGTGAAGATGATCACTGGTGATCAGCTGGCTATCGGCAAGGAGACTGGCCGTAGGCTTGGCATGGGAAGCAACATGTATCCTTCTTCCTCCCTTCTTGGTGAACACAAGGATGAGTCTATCGCTGCACTTCCAATTGATGAGCTTATTGAGAAGGCTGATGGCTTCGCCGGTGTCTTTCCTGAGCACAAATATGAGATAGTGAAGAGACTACAAGATAGGAAACACATATGCGGAATGACTGGAGATGGTGTGAATGATGCTCCTGCATTGAAGAAGGCAGATATTGGGATTGCAGTGGCTGATGCAACCGATGCAGCTCGAAATGCATCTGACATTGTTTTGACAGAACCTGGTTTAAGTGTGATTATCAGTGCCGTGTTGACAAGCCGTGCCATTTTCCAAAGAATGAAGAACTACACCATCTATGCAGTTTCTATCACAATCCGAATTGTGTTGGGCTTTCTCTTGCTTGCTCTTATCTGGAAATTTGATTTCTCACCTTTTATGGTTCTGATCATTGCCATACTAAATGATGGGACCATCATGACCATTTCAAAGGATAGAGTCAAGCCATCACCTTCTCCAGATTCATGGAAACTAAATGAGATTTTCGCCACTGGAGTAGTACTTGGATCCTACATGGCTGTTATGACTGTTGTCTTCTTCTGGGCTGCTCATGCTTCGGATTTCTTCACAGAAAAATTCGGTGTCAGATCAATTAGAGAAAACGATAAAGCATTAACATCAGCTGTTTATCTTCAAGTGAGTATTGTGAGTCAGGCTCTCATCTTCGTTACTCGGTCAAGAAGCTGGTCTTATGTTGAACGGCCTGGTTTGTTGCTTCTGGGAGCCTTTCTCATAGCACAATTGATTGCCACTATCATAGCGGCGTATGCAAACTGGGGATTTGCAGATATAGAAGGAATAGGATGGGGCTGGGCAGGAGTAATATGGCTTTACAACATTGTCTTCTACATTCCTTTGGATTTACTAAAGTTCATAATCCGATATGCATTGAGTGGGAAAGCATGGAATAATATTACAGAGACCAGGACGGCTTTCACAACGAAGAAGGATTACGGAAGAGGAGAACGAGAAGCTCAATGGGCCACAGCTCAACGTACCCTCCATGGACTCAATCCTCCTCAAGCCGAACAAATCCTCAATGAAATGAACTCCTATGGCGAATTATCAGAACTCGCAGAACAAGCTAAGAAACGCGCTGAAGTTGCAAGGTTGAGGGAGCTTCACACATTGAAGGGTCATGTGGAATCGGTGGTGAAACTGAAGGGGCTTGACATAGATACGATTCAGCAACACTATACGGTTTGA 2526 0.4517 MAGGSLDEIKKENVDLERESKLLKFLGFMWNPLSWVMEAAAIMAIALANGGGQPPDWQDFVGIVALLIINSTISFIEENNAGNAAAALMASLALKTKVLRDGKWTEQDASVLVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVAKNSSDEVFSGSTVKQGEIEAIVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIAIEELAGMDVLCSDKTGTLTLNKLTVDKTLVEVFVKDIDKDTLVLLGARASRVENQDAIDACIVGMLGDPKEARDGITEVHFLPFNPVDKRTAITYIDSAGNWHRVSKGAPEQIVELCNVKEDIKKKVHSIIDKFADRGLRSLAVARQEVPEKNKESPGAPWQFVGLLPLFDPPRHDSAETIKRALHLGVNVKMITGDQLAIGKETGRRLGMGSNMYPSSSLLGEHKDESIAALPIDELIEKADGFAGVFPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKKADIGIAVADATDAARNASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFLLLALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPSPDSWKLNEIFATGVVLGSYMAVMTVVFFWAAHASDFFTEKFGVRSIRENDKALTSAVYLQVSIVSQALIFVTRSRSWSYVERPGLLLLGAFLIAQLIATIIAAYANWGFADIEGIGWGWAGVIWLYNIVFYIPLDLLKFIIRYALSGKAWNNITETRTAFTTKKDYGRGEREAQWATAQRTLHGLNPPQAEQILNEMNSYGELSELAEQAKKRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0488 841 PRINTS P-type cation-transporting ATPase superfamily signature 373 384 - -
Lele40g0488 841 PRINTS P-type cation-transporting ATPase superfamily signature 141 155 - -
Lele40g0488 841 PRINTS P-type cation-transporting ATPase superfamily signature 501 513 - -
Lele40g0488 841 PRINTS P-type cation-transporting ATPase superfamily signature 395 405 - -
Lele40g0488 841 PRINTS P-type cation-transporting ATPase superfamily signature 478 497 - -
Lele40g0488 841 Gene3D - 56 201 - -
Lele40g0488 841 FunFam ATPase 4 plasma membrane-type 463 705 - -
Lele40g0488 841 FunFam Plasma membrane ATPase 371 526 - -
Lele40g0488 841 FunFam Plasma membrane ATPase 94 178 - -
Lele40g0488 841 SUPERFAMILY HAD-like 215 525 IPR036412 -
Lele40g0488 841 SFLD C1.7: P-type atpase like 206 529 - -
Lele40g0488 841 Gene3D - 94 178 - -
Lele40g0488 841 Gene3D - 231 378 IPR023299 GO:0000166
Lele40g0488 841 Gene3D - 790 841 - -
Lele40g0488 841 PRINTS H+-transporting ATPase (proton pump) signature 650 671 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele40g0488 841 PRINTS H+-transporting ATPase (proton pump) signature 450 466 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele40g0488 841 PRINTS H+-transporting ATPase (proton pump) signature 478 494 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele40g0488 841 PRINTS H+-transporting ATPase (proton pump) signature 335 353 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele40g0488 841 PRINTS H+-transporting ATPase (proton pump) signature 509 534 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele40g0488 841 Coils Coil 6 26 - -
Lele40g0488 841 PANTHER CALCIUM-TRANSPORTING ATPASE 208 773 - -
Lele40g0488 841 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 63 187 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele40g0488 841 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 453 564 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele40g0488 841 Gene3D - 216 515 IPR023214 -
Lele40g0488 841 Pfam E1-E2 ATPase 94 208 - -
Lele40g0488 841 FunFam Plasma membrane ATPase 231 378 - -
Lele40g0488 841 ProSitePatterns E1-E2 ATPases phosphorylation site. 221 227 IPR018303 -
Lele40g0488 841 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 208 696 IPR006534 GO:0008553|GO:0016020|GO:0120029
Lele40g0488 841 Pfam haloacid dehalogenase-like hydrolase 215 492 - -
Lele40g0488 841 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 737 IPR023298 -
Lele40g0488 841 Coils Coil 792 812 - -
Lele40g0488 841 SFLD p-type atpase 206 529 IPR044492 -
Lele40g0488 841 CDD P-type_ATPase_H 17 731 IPR006534 GO:0008553|GO:0016020|GO:0120029
Lele40g0488 841 SUPERFAMILY Calcium ATPase, transduction domain A 95 191 IPR008250 -
Lele40g0488 841 Gene3D - 208 705 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0488 Lele-ChrLele40 4061804 4066234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0488 17 812 Primary Pumps ATPases AT1G80660 71.149 0.0 1192