LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele40g0476	ATGGGTTTTGATTTGTCTGAAATAATGATGCAGGACATGGATGATACTGAAGACTTCCACGATCAGTTTTGTCACATGATGATGTCTTTTGATAAGGAAGACGAAGAGTTTCTCAGAAACATTCTTCAGCAGCAGCCAGCTGGTGGAAATAGGAATAATGAGTTGTCTTCTTCTTCTCAAAGCGAAGAAGATAAATCCTCTCCCACCGTAGATATCTCTACCGACGGCTCCGGCAACCGTGGCGGTGGTTCGAATGTTGACAACAAAAACCGTGTGATGTCTGCTAAATCATACATTTTATCATTTGATCAATCCAACGTAATACCAGCAGAAGAAACAATCTCAAAAAACGAAGAATCCAGTACATCTGAACTTTGTTCATTAAAAAGGATAAGAGAGACGTGTAACAATGTTGAGCCTAGAAAGAAGACTAGAAGCTGTTCAGAGACTGCAAATCACATAATGGCAGAGAGGAGGAGAAGGCAGCAGCTCACAGAGAGATTTATTGCACTTTCGGCAACTATACCGGGCTTGAAGAAGATGGACAAAGCTACAATTCTTCAAGAAGCGACGAAATACGTAAAGCAGCTTCAAGAACGAGTAACAGAGCTAGAGAAACAAAATATTGTAAACAACACTACAACATGGGACTCATCAATGATATCGATCAAGAAATGTGAGCTACACAGAATTAATGATGATTTGTGTTGTGAAGAAAATGATCAAGTGTTGCCTCAGATTGATGCAAAAGTGTTGGAGAATCAAGTGCTGTTTGGAATCTATTGTGAGAAGCAAAAGGGCATCGAATTTAAAATATTGACTTTGCTTGAGAATTTTCATCTTCATGTCACTAGTAGCAGCGTCTTGCCATTTGGGAATTCCACTCTTGGCATCACCATCATTGCCCAGATGGGGGAGGAATACAGAATGACAGTTAATGAAGTGATGAAAAACCTACGACAAGTTCTGTCAAAGTCGCACGATGCTGATCCGTACTAG	999	0.4024	MGFDLSEIMMQDMDDTEDFHDQFCHMMMSFDKEDEEFLRNILQQQPAGGNRNNELSSSSQSEEDKSSPTVDISTDGSGNRGGGSNVDNKNRVMSAKSYILSFDQSNVIPAEETISKNEESSTSELCSLKRIRETCNNVEPRKKTRSCSETANHIMAERRRRQQLTERFIALSATIPGLKKMDKATILQEATKYVKQLQERVTELEKQNIVNNTTTWDSSMISIKKCELHRINDDLCCEENDQVLPQIDAKVLENQVLFGIYCEKQKGIEFKILTLLENFHLHVTSSSVLPFGNSTLGITIIAQMGEEYRMTVNEVMKNLRQVLSKSHDADPY	332

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele40g0476	332	Coils	Coil	187	207	-	-
	Lele40g0476	332	Pfam	Helix-loop-helix DNA-binding domain	151	198	IPR011598	GO:0046983
	Lele40g0476	332	MobiDBLite	consensus disorder prediction	44	90	-	-
	Lele40g0476	332	Gene3D	-	147	216	IPR036638	GO:0046983
	Lele40g0476	332	PANTHER	BHLH TRANSCRIPTION FACTOR	23	325	-	-
	Lele40g0476	332	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	151	208	IPR036638	GO:0046983
	Lele40g0476	332	SMART	finulus	154	203	IPR011598	GO:0046983
	Lele40g0476	332	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	148	197	IPR011598	GO:0046983

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele40g0476	Lele-ChrLele40	3961305	3963649	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele40g0476	132	324	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT2G22770	41.038	1.15e-43	151

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Lele40g0476		HLH	2.9e-11	No_clan

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