Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0474 ATGCTAACTAGTTCGAGTACAGGGATAGCTGGACCATATTCGTCGGACGAAATTACGCGGCCACCAGCTATGGCGGTTTCAGGCGAGCGAAGTGAATCTTCATCCTCGTCCTTCTTGTCCAATTTAACTCAGGCCTTTCCTTTCTCTTCTGGAAACCCTAGAATTGAGGAGACTAGAGGCGTCATGCATCTCTATCGCGAGGATCCCACTTCCTCCTCGCCTGCTGATCTTCCTGTTGGACGGAAACCACTTGTCTGTGTGCTTGGAGTGCCAAATCACATGACATATGCAGATTTTTGCCAGTTCTGTGGTTCATTTATTCAGCATATCTTAGAGATGCGGATTGTCAGAAATGATGGTATGGAGGATCAGTACAGTGTTTTAATTCGTTTTGATGACCAAGATTCTACAGATGGTTTCTACAAGCATTATAATGGGCGTCGATTCTCATCTATGGAGGTGGAAGTTTGCTGTGTTCTCTTCACATTGGATGTGCAGTACACTGGCCTGATTGAACATGCACAGGCATCTAATGCTAGCTCAACTGAACAGCCTTCATGCCCAGTGTGCTTAGAGCGACTGGACCAAGATACAAGTGGAATTCTTACAACCATTTGCAATCATTCTTTCCATTGTTCTTGTATTTCAAAATGGGCAGATTCATCTTGTCCTGTATGCCGGTATTGTCAGCAGCAGGCTGAAAAATCTATATGTTTTGTTTGTCAAACCACTGAAAACCTCAGCATATGCGTTATTTGTGGGTTTGTTGGCTGTGGAAAATACAAAGCAGAGCATGCCAAAATACACTGGAAAGACACACAGCATTGCTACTTCCAAGAAGTGGAAACACAACGAGTATGGGATTATGTGAAAGACAACTACGTTCATCGACTAATCCTGTCCAAAACTGATGGGAAGTTGGTTGAGTTAAACTCTCACTGTGAGCATACAGGCAATGGATGTGGAAGTTGCAGCTGTGAAGATAATGCTATGAGTGAGGCTATACATAACAGTAAAGTCGAAGCTATTGTCAACGAGTACAATGAATTGCTTGCCACACAACTTGAAAACCAAAAATTATACTTTGAGTCCTTACTACAAGAAGTAAAAGAAGAAACTGAAAGAGAAATTTCTAAAGCCGTTGAGAAGGCCGTTGCTGTTAAACTGCAGAAGCTGCAGTCCAAGCTTGACAGATGTTATAAGGAGAAGAAATTTTTGGATGATCTAAATGAGAATCTGCTGAAAAATCAGGAGATCTGGAAAGCCAAGATACTTGAGATTGAAGAAAGGGAGAAAAAGGCCATAAAACTCAAGGATGATAAAATGAGGGCCCTGGAAGAGCAGGTGAAATATCTGATTCTCTTATTTAATTTGAAATTAAGCGATCTCATGATTTGTCTTGAAAATGGGAAGACAGCTGACCAACTGTCCGGGTCAGGCGAAGTAAAAGACGAAACTGCTGTCCCCACTTGA 1473 0.4216 MLTSSSTGIAGPYSSDEITRPPAMAVSGERSESSSSSFLSNLTQAFPFSSGNPRIEETRGVMHLYREDPTSSSPADLPVGRKPLVCVLGVPNHMTYADFCQFCGSFIQHILEMRIVRNDGMEDQYSVLIRFDDQDSTDGFYKHYNGRRFSSMEVEVCCVLFTLDVQYTGLIEHAQASNASSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICFVCQTTENLSICVICGFVGCGKYKAEHAKIHWKDTQHCYFQEVETQRVWDYVKDNYVHRLILSKTDGKLVELNSHCEHTGNGCGSCSCEDNAMSEAIHNSKVEAIVNEYNELLATQLENQKLYFESLLQEVKEETEREISKAVEKAVAVKLQKLQSKLDRCYKEKKFLDDLNENLLKNQEIWKAKILEIEEREKKAIKLKDDKMRALEEQVKYLILLFNLKLSDLMICLENGKTADQLSGSGEVKDETAVPT 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0474 490 CDD RING-H2_BRAP2 185 228 - -
Lele40g0474 490 ProSiteProfiles Zinc finger UBP-type profile. 221 314 IPR001607 GO:0008270
Lele40g0474 490 MobiDBLite consensus disorder prediction 1 35 - -
Lele40g0474 490 SMART ring_2 187 226 IPR001841 -
Lele40g0474 490 Coils Coil 352 448 - -
Lele40g0474 490 Pfam Ring finger domain 186 227 IPR001841 -
Lele40g0474 490 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 229 IPR013083 -
Lele40g0474 490 PANTHER BRCA1-ASSOCIATED PROTEIN 28 457 - -
Lele40g0474 490 SMART Zf_UBP_1 237 286 IPR001607 GO:0008270
Lele40g0474 490 Pfam Zn-finger in ubiquitin-hydrolases and other protein 238 297 IPR001607 GO:0008270
Lele40g0474 490 Pfam BRCA1-associated protein 2 78 174 IPR011422 -
Lele40g0474 490 ProSiteProfiles Zinc finger RING-type profile. 187 227 IPR001841 -
Lele40g0474 490 CDD RRM_BRAP2_like 85 166 - -
Lele40g0474 490 SUPERFAMILY RING/U-box 179 227 - -
Lele40g0474 490 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 230 305 IPR013083 -
Lele40g0474 490 SUPERFAMILY RING/U-box 203 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0474 Lele-ChrLele40 3939871 3943770 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0474 183 227 C3H Transcription Factor Family AT1G72220 48.936 1.87e-07 51.6