Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0455 ATGGCAGAAGTTTCTATCAACAGTGAGCCAGTAGTAGATGATGATGCTGATGGATTTGAGATTGAAGGGGATTGTGGAATGGCAGATTTTGTCGGTCAAACTGGCATAATCCAAGGGGAGAACCCACTTCCTCCTGCTATTGGAATGGAATTTGAGACTTATGAGGATGTATATTATTTCTACAATTGCTACGCCAAGGATCAAGGATTCGGGGTTCGAGTAAGTAATACTTGGTATAGGAAGAGCAAGGAGCGGTACAGAGGAAAACTCAGCTGCAGTAGTGCTGGTTTCAAGAAAAAAAGTGAAGCGAATCGCCCGAGACCTGAAACAAGAACTGGTTGTCCAGCGATGATAAAGTTCAGGCTGATGGATTCCAAAAGATGGAGAATTATAGAAGTGGAGCTTGAGCATAATCACTTGATAAACCCAACGAGTGGAAAGTTCTACAAATCTCATAAGGGCCTGGGTTTGGGGACCAAAAGAGCGTTGCAATTAGACAGTACTGAAGAAGTTCAGAAGATTAGACTATTTCGAACTGTGATTATTGATGGCGAGACTAATGGAAGTTTAGATGTTGATGAAGGACAACCCAAAAGCAAAGCTGTATGGTCCAATCAATTGAAGCTAAATAAAGAAAAACTGGGGGGATTGATAGAATATGAGGCAGTGAAAGCAGCAATTAGTAAAGCAGTTTATTACTCCCTGAGGACTGAGGAATTCGATGCAGCTTGGGAGGACATGATGCAGCAATACAAAATTCGAGGTCATGAGTGGCTTCAAGCATTATACGAGGACAGGAAACGAATGTTTGAAAGGGAAATAAAAGGAATGTACTCCTGTTTAAGCACCAGACAGATAAATGTGGATGGACCAGTAATCTCGTACCTCATCAAAGAACAAGTTGAAGTTGAAGGAAATCAGAGAGTTACAAGAGATTATGAGGTGTATTACAATGGGTCTGAAATGGAGATCCTTTGCAGTTGTGGTTTGTTCAACTTCAAAGGAATCTTGTGTAGGCATGCATTATCTGTCTTAGACCAGAATGGTATAGAAGAGATTCCAGCTCAGTATATTCTCTCAAGATGGAGAAAAGATCTGAAGCGAAGTTATGTTATTGATCAGAAACCTAGTGGCATTGATATTAATAACCCAGTTCATAGGTATGATCATTTATATAGACGAATAGTGCAGGTTGTGGAGGAAGAGCTTTGGCGCGCTTTAGCCTTTCTTGTTCTAGGTTCTAGCGAAGAAGCCCTCGTCTCTTTCTATCCAAGGCTGTTTTTCTCTAGGATGAAGTTCAAGGCTTTTCTCACAGAGAATGGAGTGACTCTTTTGGAGAAGAGGTTCCTGCCAGCACTCGACAAGATGGGAAAGGTATGTCACCTCTACCTCACAAGAGATCATGCCATGTTCCTTCACAACCTCCTTAATGGCGATGGTATTCAATCTATTGCTCAATTTCGCAAAGAAGCCCTTTTCGATGACTATCGCATCTCCAGCCAGAACGAAGATCGCATTGCTTTTACCATAGATGTCACTCTTCTCCAACGTGCGGTTCGTAGCAGCGTGAGCATTTGTTCTGAACTTGGTGGCAGTGGAGTTACTGATAATCGTCTCCAAATTAAGTTGGTGAAAAAGCTACCTCCAAATTGTACCCAACCTATGCCTTTTCTTACCTTTGAAACCAAAGGTTATAAATCTGCAGTTATTCAGGATATCCCAATTTCAAAGCCATTATCAAGAGCTCAAGTTCTTGAACTTCAAGCTGCTTTGGATATGGCCCAGGACCTGCCTCAAACTCTAGTTCAGGTGCCAGATTTGAACCAATTGCAGAACTTTGTGGATAGGTTGAAGCAGGTGGGTGATGTGCTTAGTGTCTCCATAAGCAAGTACGGGAATTTGCACATACAGGTGTCAACGACACTGATCACTCTCGGTTCCGAGTTTCGGAAATTGCTGGTCATTGGGGAGAAAGCAGATGCCCCTTCTGAAGATCAAAATCTGAGTGCTCAGACTCGGTCATCCCGGTCAGTTGCCAGAGGAGATGCTCAATCTGTGCAAGTGAGTGTGAAGCACTTTGCCAAGAGCCTTCAGTGTCACTTGACCAAACCAGATTGTGCTTTCTATGGGATTGCTCCACTTGGTGCTTGTTTGACAGTTATATTTCAGTTTTTCATTCCTGGTTCTCGGCAGACCGACAAGTCAATTAGCTTGCACTGCAGACTTCCTGTACTTGACCCTGGTTCTAGTTGA 2253 0.4283 MAEVSINSEPVVDDDADGFEIEGDCGMADFVGQTGIIQGENPLPPAIGMEFETYEDVYYFYNCYAKDQGFGVRVSNTWYRKSKERYRGKLSCSSAGFKKKSEANRPRPETRTGCPAMIKFRLMDSKRWRIIEVELEHNHLINPTSGKFYKSHKGLGLGTKRALQLDSTEEVQKIRLFRTVIIDGETNGSLDVDEGQPKSKAVWSNQLKLNKEKLGGLIEYEAVKAAISKAVYYSLRTEEFDAAWEDMMQQYKIRGHEWLQALYEDRKRMFEREIKGMYSCLSTRQINVDGPVISYLIKEQVEVEGNQRVTRDYEVYYNGSEMEILCSCGLFNFKGILCRHALSVLDQNGIEEIPAQYILSRWRKDLKRSYVIDQKPSGIDINNPVHRYDHLYRRIVQVVEEELWRALAFLVLGSSEEALVSFYPRLFFSRMKFKAFLTENGVTLLEKRFLPALDKMGKVCHLYLTRDHAMFLHNLLNGDGIQSIAQFRKEALFDDYRISSQNEDRIAFTIDVTLLQRAVRSSVSICSELGGSGVTDNRLQIKLVKKLPPNCTQPMPFLTFETKGYKSAVIQDIPISKPLSRAQVLELQAALDMAQDLPQTLVQVPDLNQLQNFVDRLKQVGDVLSVSISKYGNLHIQVSTTLITLGSEFRKLLVIGEKADAPSEDQNLSAQTRSSRSVARGDAQSVQVSVKHFAKSLQCHLTKPDCAFYGIAPLGACLTVIFQFFIPGSRQTDKSISLHCRLPVLDPGSS 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0455 750 SMART 26again6 324 351 IPR006564 GO:0008270
Lele40g0455 750 FunFam Checkpoint protein 431 729 - -
Lele40g0455 750 PANTHER MITOTIC AND DNA DAMAGE CHECKPOINT PROTEIN HUS1 431 731 - -
Lele40g0455 750 Gene3D - 430 729 - -
Lele40g0455 750 Pfam Hus1-like protein 431 729 IPR007150 GO:0000077|GO:0030896
Lele40g0455 750 Pfam SWIM zinc finger 313 346 IPR007527 GO:0008270
Lele40g0455 750 Pfam FAR1 DNA-binding domain 60 142 IPR004330 -
Lele40g0455 750 ProSiteProfiles Zinc finger SWIM-type profile. 313 349 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0455 Lele-ChrLele40 3728819 3733557 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lele40g0455 Hus1 1e-72 CL0060