Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0433 ATGGCAGAAACTCATCTTCATGGAACTCTCCACGCCACCATTCATGAGGTGGACAAGCTAGGTGGTAATGAAGAAGGCAATATTTTCAGCATGCTTAAGTCAAAAATCGAGGACACGGTTGGTGTAGGAAAGGGCTCATCCGAAATCTACGCAACCATTGACCTGGAAAAAGCAAGAGTTGGAAGAACCAGGGTGTTAAAAAACACAGATTCCAGTCTCAGGTGGGAAGAATCTTTCCACATCTACTGTGCCCACGTGGCATCCAATGTCATCTTCACCGTCAAAGGCGTTAACAAGATCGGCGCAACCTTAATCGGACGAGCTCACGTCCACGTCGACAACATCACCAGCGGCGACACCTATGATGAATGGATCGAAATCTTAAATGAGAACAAAGAGCCCATTGGCTCCAAAATCCACGTCAAGCTCCAATACTTCGATGTCTCAAAAGATAGAAACTGGAATCGAGGTATTAGAAGCCCTAAATACCCAGGAGTACCCTACACTTTCTTCTCACAAAGACAAGGTTGTAAGGTTACCTTGTACCAGGACGCTCATGTCCCTGACGATTTTATCCCCAGAATCCCCCTCTCAGACGGCAAATATTACCAACCTCATCGATGTTGGGAAGATGTTTTCGACGCAATTACTAATGCAAAGCACTTGATTTACATCACTGGTTGGTCTGTTTACACTGAGATTAAACTAGTGAGAGATGCTAAGAGGCCAAAAGACGGAGGTCATGTAACCCTAGGACAGCTTCTGAAGGAAAAGGCAGACCAGGGTGTTAGGGTTTTAATGCTTGTTTGGGACGATAGAACTTCTGTTAGTTTGTTAAAAAAAGATGGGTTAATGGCAACACATGATGAAGAAACGGAGAAATTTTTCCAAGACACTCAAGTTCACTGTGTCCTATGCCCTCGTGATCCCGACGAGGGTGCTGGAAGTATAATTCAGGACGTACAGACTTCCACCATGTTCACTCATCACCAGAAGATCGTGGTGGTCGACAGTGAGCTTCCGGGAAAAGGGTCGTCAAGCAAGAGAAGAATAATGAGCTTCGTCGGTGGCCTTGATTTATGCGATGGAAGATACGACACTGCGTTTCATTCTCTTTTCAGAACATTGGATACTGTTCATCACGATGACTTCCATCAACCTAACTTCGCCGGGGCCGACATCAATAAAGGCGGACCGCGAGAGCCATGGCATGATATACATTCACGTCTTGAAGGGCCTGTCGCTTGGGATGTTTTGTTTAATTTTGAACAGAGATGGAAGAAGCAAGGAGGGAAGGATGTTCTTATGTCGCACGGAGAGATGGAGGAGATAGTTATTCCACCGTCTCCGGTGATGTTCCCGGAGGATCACGAGACATGGAATGTTCAGTTGTTCCGATCTATCGACGGTGGAGCCGCCTTCGGGTTCCCAGACAGCCCAGAGGAAGCAGCTGACTCGGGGCTGGTGAGTGGGAAAAACAACATCGTAGATAGGAGTATTCAAGATGCATATATTCATGCAATAAGAAGAGCGAGGAAGTTCATATACATAGAGAATCAGTACTTTCTAGGAAGCTCTTATGCATGGAGCGCTAAAGATGGCGACATAAAACCAGAAGAAGTTAACGCACTGCACGTGATCCCCAAGGAGCTATCACTGAAAATCGTGAGTAAGATTGAAGCAGGAGAGAGGTTCACGGTGTATGCGGTGGTCCCGATGTGGCCGGAGGGCATACCGGATAGTGGATCGGTGCAAGCAATACTGGACTGGCAGAGGAGAACGATGGACACTATGTATAAAGACATTGTTGACGCGTTGGAGGCAAAGGGAATAAGGGAAGATCCTCGCAAGTATTTAACATTCTTTTGTCTTGGAAACAGAGAAGTGAAACGAGACGGCGAGTATGAACCAGCAGAACAACCAGAACCTGATTCTCCTTATGAAAAAGCCCAACAAGCTCGTCGCTTCATGATTTATGTTCACACCAAGATGATGATAGTGGATGATGAGTACATAATCGTGGGATCTGCAAACATAAACCAGAGGTCAATGGACGGAGCAAGGGACACAGAAATAGCGATGGGGGGATATCAGCCGCATCATTTGGCGACGAGCAGGGGGCCGGCTAGAGGTCAGGTCCATGGATTCCGGATGGCGTTGTGGTATGAGCATCTTGGGGTGATGGATGAGTGCTTCAATCACCCAGAAAGTGAAGAATGTGTAGAGAAGGTGAACCAGATGGCTGACAAGTACTGGGAACTCTACGCTGATGAATCGTTTGATGAAGATCTTCCAGGTCACTTGCTGCGTTATCCTGTTAAGATTTCTAGAGAAGGACGAGTTCAAGAACTTCAAGGCTTTGAGTTCTTCCCTGATACTCAGGCTCGTATTCTTGGTTCCAAATCTGACTACATGCCACCAATCCTTACTACTTAA 2436 0.4647 MAETHLHGTLHATIHEVDKLGGNEEGNIFSMLKSKIEDTVGVGKGSSEIYATIDLEKARVGRTRVLKNTDSSLRWEESFHIYCAHVASNVIFTVKGVNKIGATLIGRAHVHVDNITSGDTYDEWIEILNENKEPIGSKIHVKLQYFDVSKDRNWNRGIRSPKYPGVPYTFFSQRQGCKVTLYQDAHVPDDFIPRIPLSDGKYYQPHRCWEDVFDAITNAKHLIYITGWSVYTEIKLVRDAKRPKDGGHVTLGQLLKEKADQGVRVLMLVWDDRTSVSLLKKDGLMATHDEETEKFFQDTQVHCVLCPRDPDEGAGSIIQDVQTSTMFTHHQKIVVVDSELPGKGSSSKRRIMSFVGGLDLCDGRYDTAFHSLFRTLDTVHHDDFHQPNFAGADINKGGPREPWHDIHSRLEGPVAWDVLFNFEQRWKKQGGKDVLMSHGEMEEIVIPPSPVMFPEDHETWNVQLFRSIDGGAAFGFPDSPEEAADSGLVSGKNNIVDRSIQDAYIHAIRRARKFIYIENQYFLGSSYAWSAKDGDIKPEEVNALHVIPKELSLKIVSKIEAGERFTVYAVVPMWPEGIPDSGSVQAILDWQRRTMDTMYKDIVDALEAKGIREDPRKYLTFFCLGNREVKRDGEYEPAEQPEPDSPYEKAQQARRFMIYVHTKMMIVDDEYIIVGSANINQRSMDGARDTEIAMGGYQPHHLATSRGPARGQVHGFRMALWYEHLGVMDECFNHPESEECVEKVNQMADKYWELYADESFDEDLPGHLLRYPVKISREGRVQELQGFEFFPDTQARILGSKSDYMPPILTT 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0433 811 CDD C2_plant_PLD 2 146 - -
Lele40g0433 811 Gene3D Endonuclease Chain A 472 701 - -
Lele40g0433 811 Pfam Phospholipase D C terminal 729 801 IPR024632 -
Lele40g0433 811 Gene3D Endonuclease Chain A 198 444 - -
Lele40g0433 811 ProSiteProfiles C2 domain profile. 1 125 IPR000008 -
Lele40g0433 811 SMART C2_3c 9 124 IPR000008 -
Lele40g0433 811 SUPERFAMILY Phospholipase D/nuclease 488 741 - -
Lele40g0433 811 Pfam C2 domain 10 127 IPR000008 -
Lele40g0433 811 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 656 683 IPR001736 GO:0003824
Lele40g0433 811 FunFam Phospholipase D delta 199 444 - -
Lele40g0433 811 SUPERFAMILY Phospholipase D/nuclease 150 436 - -
Lele40g0433 811 Gene3D C2 domain 6 157 IPR035892 -
Lele40g0433 811 Pfam Phospholipase D Active site motif 657 683 IPR001736 GO:0003824
Lele40g0433 811 Pfam Phospholipase D Active site motif 325 364 IPR001736 GO:0003824
Lele40g0433 811 PIRSF PLD_plant 1 811 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Lele40g0433 811 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 5 148 IPR035892 -
Lele40g0433 811 SMART pld_4 325 364 IPR001736 GO:0003824
Lele40g0433 811 SMART pld_4 656 683 IPR001736 GO:0003824
Lele40g0433 811 FunFam Phospholipase D 467 702 - -
Lele40g0433 811 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 325 364 IPR001736 GO:0003824
Lele40g0433 811 PANTHER PHOSPHOLIPASE D 6 800 IPR015679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0433 Lele-ChrLele40 3572382 3575928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0433 1 811 Phospholipase D Gene Family (Wang group) AT3G15730 73.464 0.0 1293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele40g0433 40 3572382 3575928 Lele41g0775 41 17611031 17614078 CCT
Lele40g0433 40 3572382 3575928 Lele42g0767 42 20694457 20699388 CCT
Lele40g0433 40 3572382 3575928 Lele43g0622 43 5498404 5507927 CCT
Lele40g0433 40 3572382 3575928 Lele44g0574 44 4465341 4468198 CCT
Lele39g0932 39 18234998 18239140 Lele40g0433 40 3572382 3575928 ECH
Lele40g0433 40 3572382 3575928 Lele40g0433 40 3572382 3575928 ECH
Lele37g0494 37 4034147 4038403 Lele40g0433 40 3572382 3575928 hybridization
Lele38g0461 38 3734753 3738155 Lele40g0433 40 3572382 3575928 hybridization