Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0420 ATGAGTAACGCTTCTTCTTTCGCGGGTCAATTTCATTGTGATGAGAAGTCCCCTTCTTCATTCGACTTTGAATACGAAGACCCATTGTTCAAGAAGCCCGCAAATCCATCGAAACTCCCAAATTCGAGGGCACATGTACAGAACGAGGCGAGGGTTCGCTATTTCAAGACTCAACTATGCAGAAAGTTTAGACAAGGAACTTGTCCACTTGGGTCCCATTGTAGCTTTGCTCATAGCGTTGGAGAGCTTCGGAGACAAGAATTTGGTTATGACGATAGAACATTTCAGGATTCCAAACTATGCAGAATGTTCTATCAAGGGCAACAATGCTCTTATGGAAACACATGCCGTTTCCTTCATACAAGGCCGGGCGGTTTAAATTCTAGAGACACTGCAACAGTAGAAGTAATTCCTACCGGACATGGTAAAAGAAAATATGATCAATTAGAATTCAAGAGTGGGTTTGATGAGAGTTCTGGTGCTGAAGTGAATCCAAAGAAAGAGTTGCTAAAAACAAAGAAGTGCATCAAGTGGGACATGAAGGGGCACTGCCCGTATGGACGTATATGTCGCTTTGCTCATGGGCAAGCAGAATTAGGGAAGCTTGATGGCTACTCAACAGCTGAATGCAGGGTAGTGCAAACTTCTGCTGCTGGTGGTACAAATGTGTCAAGTGTTGTAGTGTCAACTGGCACTTTGCTTAAGAATCTGAAGCAATCATTTGCATGGGATTACAAATTCAACAGAAATGAACTACACAGGATCAGTCGCATCTATGCTGATTGGATTTAA 792 0.4293 MSNASSFAGQFHCDEKSPSSFDFEYEDPLFKKPANPSKLPNSRAHVQNEARVRYFKTQLCRKFRQGTCPLGSHCSFAHSVGELRRQEFGYDDRTFQDSKLCRMFYQGQQCSYGNTCRFLHTRPGGLNSRDTATVEVIPTGHGKRKYDQLEFKSGFDESSGAEVNPKKELLKTKKCIKWDMKGHCPYGRICRFAHGQAELGKLDGYSTAECRVVQTSAAGGTNVSSVVVSTGTLLKNLKQSFAWDYKFNRNELHRISRIYADWI 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0420 263 SUPERFAMILY CCCH zinc finger 95 122 IPR036855 GO:0046872
Lele40g0420 263 Pfam CCCH-type zinc finger 99 120 IPR041367 -
Lele40g0420 263 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 171 196 IPR000571 GO:0046872
Lele40g0420 263 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 55 79 IPR000571 GO:0046872
Lele40g0420 263 ProSiteProfiles Zinc finger C3H1-type profile. 169 197 IPR000571 GO:0046872
Lele40g0420 263 ProSiteProfiles Zinc finger C3H1-type profile. 95 123 IPR000571 GO:0046872
Lele40g0420 263 SUPERFAMILY CCCH zinc finger 52 84 IPR036855 GO:0046872
Lele40g0420 263 ProSiteProfiles Zinc finger C3H1-type profile. 54 81 IPR000571 GO:0046872
Lele40g0420 263 SUPERFAMILY CCCH zinc finger 169 199 IPR036855 GO:0046872
Lele40g0420 263 Gene3D - 164 201 - -
Lele40g0420 263 Gene3D - 96 124 - -
Lele40g0420 263 Gene3D - 44 86 - -
Lele40g0420 263 PANTHER CCCH ZINC FINGER/TIS11-RELATED 47 154 IPR045877 GO:0003729
Lele40g0420 263 SMART c3hfinal6 169 196 IPR000571 GO:0046872
Lele40g0420 263 SMART c3hfinal6 97 122 IPR000571 GO:0046872
Lele40g0420 263 SMART c3hfinal6 54 80 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0420 Lele-ChrLele40 3457228 3459038 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0420 169 213 C3H Transcription Factor Family AT1G68200 45.833 9.98e-06 44.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele40g0420 zf-CCCH 2.7e-05 CL0537