Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0414 ATGTGGCGGAGACTTGTATCTTCTCACCTCAAATCCCTAGCTACACTATCACCTTCTTCTTCCCGATCTGCCCCCATCGCTGCCCGATTCACTCTCAACAATTCTTCTTGTCTCTCTCCTTCGTCCTATTTTCTCAGCCGCCACTTCAGCACCGAGTCTGGGGAAAATGTGGTTAAAAAGAAGGTTGAGGATGTAATGCCTATAGCTACTGGGCATGAGCGCGAGGAGCTTGAGGCCGTGCTTGAGGGAAGGGAGATTCTCGATACAGACCATCCCGAAGGTCCTTTTGGTACAAAGGAAGCACCTGCTGTTATCAAGTCTTACTATGACAAAAGAATAGTTGGATGCCCAGGGGGTGAAGGCGAGGATGAGCATGATGTAGTCTGGTTTTGGTTGGAAAAGGGCAAGCCTCATGAATGTCCAGTTTGTTCACAGTATTTTGTGCTTGAAGTGGTGGGACCCGGTGGGCCACCTGATGGACATGGCGATGACGAAGACGATGAACACCACCATTGA 516 0.4961 MWRRLVSSHLKSLATLSPSSSRSAPIAARFTLNNSSCLSPSSYFLSRHFSTESGENVVKKKVEDVMPIATGHEREELEAVLEGREILDTDHPEGPFGTKEAPAVIKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVLEVVGPGGPPDGHGDDEDDEHHH 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0414 171 Pfam Cytochrome c oxidase subunit Vb 69 155 IPR002124 GO:0005740|GO:0005751|GO:0006123
Lele40g0414 171 SUPERFAMILY Rubredoxin-like 59 155 - -
Lele40g0414 171 FunFam Cytochrome c oxidase subunit Vb 58 152 - -
Lele40g0414 171 ProSiteProfiles Cytochrome c oxidase subunit Vb, zinc binding domain profile. 57 156 IPR002124 GO:0005740|GO:0005751|GO:0006123
Lele40g0414 171 PANTHER CYTOCHROME C OXIDASE SUBUNIT 5B, MITOCHONDRIAL 1 170 IPR002124 GO:0005740|GO:0005751|GO:0006123
Lele40g0414 171 CDD Cyt_c_Oxidase_Vb 59 152 IPR002124 GO:0005740|GO:0005751|GO:0006123
Lele40g0414 171 Gene3D Cytochrome c oxidase, subunit Vb 58 152 IPR036972 GO:0005740|GO:0005751|GO:0006123
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0414 Lele-ChrLele40 3406237 3410416 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g0577 43 5187523 5191416 Lele40g0414 40 3406237 3410416 CCT
Lele44g0537 44 4185310 4190465 Lele40g0414 40 3406237 3410416 CCT
Lele39g0954 39 18386869 18390165 Lele40g0414 40 3406237 3410416 ECH
Lele40g0414 40 3406237 3410416 Lele40g0414 40 3406237 3410416 ECH
Lele37g0472 37 3898058 3901370 Lele40g0414 40 3406237 3410416 hybridization
Lele38g0440 38 3572191 3573744 Lele40g0414 40 3406237 3410416 hybridization