Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0393 ATGTCGCCGGAGAGTACTGGAATCGGCCGCTACTCCGCCCAGTCCTTCGTCACGGAGTTGAAACTGAAGGAGACGGAGCTCACCCTCGGCCTTCCAGGCTCCAATAATCTCACTAGCGCCTCTAAACGTTCCTTCTCAGAAACCACCGTCTTCAGCCCAACTTCGTCGTCAACTAGTACCCCAGCACCTAAGGCACAAGCGGTGGGGTGGCCGCCGGTGAGGGCGAGCCGGAAGAACGTGATGAGGAGCTGCAAGTACGTGAAGGTGGCAGTGGACGGAGCTCCATATCTGAGGAAGGTAGACCTTGAGAAGTATGAGAGCTATGATCAGCTGCTCACGGGTTTAGAGGCCATGTTTGGTTCCTTGACAATTCGCAATCATATGAATGAGAGGCAGATGATGGACCTTGGGAATGGGGCAGAGTACGTGCCCACCTATGAGGACAAAGACGGTGACTGGATGCTCGTCGGAGATGTACCTTGGAAGATGTTTGTTGAATCCTGCAAAAGAATCCGGTTGATGATAAAGTCAGAGGCCAGTGGCTTAGAAATGGGAAGAACAGAGTTGAAGTTGGAGAAGAAAATGTGTGGGAATTAA 597 0.5209 MSPESTGIGRYSAQSFVTELKLKETELTLGLPGSNNLTSASKRSFSETTVFSPTSSSTSTPAPKAQAVGWPPVRASRKNVMRSCKYVKVAVDGAPYLRKVDLEKYESYDQLLTGLEAMFGSLTIRNHMNERQMMDLGNGAEYVPTYEDKDGDWMLVGDVPWKMFVESCKRIRLMIKSEASGLEMGRTELKLEKKMCGN 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0393 198 MobiDBLite consensus disorder prediction 31 70 - -
Lele40g0393 198 FunFam Auxin-responsive protein 79 186 - -
Lele40g0393 198 Pfam AUX/IAA family 82 182 IPR033389 -
Lele40g0393 198 MobiDBLite consensus disorder prediction 31 64 - -
Lele40g0393 198 ProSiteProfiles PB1 domain profile. 84 178 IPR000270 GO:0005515
Lele40g0393 198 Gene3D - 79 188 - -
Lele40g0393 198 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 20 181 IPR003311 GO:0005634|GO:0006355
Lele40g0393 198 SUPERFAMILY CAD & PB1 domains 76 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0393 Lele-ChrLele40 3185257 3186310 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0393 88 185 B3 DNA Binding Superfamily AT4G23980 31.633 2.22e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele40g0393 AUX_IAA 1.9e-45 CL0072