Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0392 ATGGCTCTCGGACTTGAAATCACAGAGCTTAGGTTGGGTCTTCCCGGCGGTGGGGATGATCAGAACAAGAGTAGTGAGGTGACCAAGAAGAGGGTGTTCTTGGAGATTGGCCGTGTTGATGGAGGTGGCGTCAGTGGTGGTGGTAGTGGTGAGGATGAGAATAGCTGCTCTGGCGATCGGAAAACACCCGCGAAGAGTGCTGTGGTGGGGTGGCCGCCGGTGGGATCATACCGGAGGAGAAACAGCATGAGTGAAGGGTCGAAGGAGAAAATTTACGTGAAGGTTAGTATGGATGGAGCTCCTTTCTTGCGAAAAGTTGATTTGGGAATGCAAAAGGGCTACTCTGAGTTAGTATCAGCCTTGGAGAAGCTCTTTGATTGCCACGGAATCGGAGAGGCATTGAAGGGAGTGGACAATTCTGATGTCGTTCCCATTTATGAAGACAGAGATGGTGACTGGATGCTTGTTGGAGATGTTCCTTGGGAAATGTTTATAGAGTCATGCAAGAGGCTGAGGATTATGAAGAGATCGGAGGCAAAAGGCTTTGATCTGCAGCCAAAAGAGTCTTTGAAGGGCAGAACGAAGTGA 588 0.4966 MALGLEITELRLGLPGGGDDQNKSSEVTKKRVFLEIGRVDGGGVSGGGSGEDENSCSGDRKTPAKSAVVGWPPVGSYRRRNSMSEGSKEKIYVKVSMDGAPFLRKVDLGMQKGYSELVSALEKLFDCHGIGEALKGVDNSDVVPIYEDRDGDWMLVGDVPWEMFIESCKRLRIMKRSEAKGFDLQPKESLKGRTK 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0392 195 ProSiteProfiles PB1 domain profile. 90 178 IPR000270 GO:0005515
Lele40g0392 195 Gene3D - 84 187 - -
Lele40g0392 195 SUPERFAMILY CAD & PB1 domains 80 175 - -
Lele40g0392 195 Pfam AUX/IAA family 58 182 IPR033389 -
Lele40g0392 195 MobiDBLite consensus disorder prediction 38 65 - -
Lele40g0392 195 FunFam Auxin-responsive protein 85 186 - -
Lele40g0392 195 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 180 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0392 Lele-ChrLele40 3176394 3178496 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0392 85 180 B3 DNA Binding Superfamily AT4G23980 40.625 6.82e-14 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele40g0392 AUX_IAA 3.9e-45 CL0072