Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0390 ATGGAGCAGCCAGAAGCCCATGATGGTCACCATCACGTAATTGACATTACAAGAAATAGTAATGACTTATCCAGCTCTACTCAAGACGATCAACATCCTGAAATGCATTTGCCACATAATGATGATCAGCCATCAGTTGGCACACAAGTTCCCATTCATCAATCATCTTCATCTTCATCAAGGTTAAGCTCCACAAATTCCTCATCAACAAGAAGAGGCGAGGGATATGGTCATCATAGAAGAAGCCCACTGAATTCTGGACTATGGATTTCTGTTGAGCTTGTTGTCACTGTGGGTCAGATCATAGCATCTATTGTTGTCTTATCAATATCCAGGAATGAAAATCCCAAAGCTCCATTATTTGCATGGATTGTGGGTTATGCATCTGGTTGTGTTGCCACACTTCCTATTCTTTACCGCCGTTATCAAAACCGTAATCAAGGCACTGGGCGAAATTTATCTCAACCATCGCAAGGCTCTTCTGGAAGCAACCCCCCAGAACGGACTTCTTATACTGCAATCTCTGTTGCTCATGTTTCATATGAAGAGAATAGTCTTACTACAGAATCAGCTACAGGGAACACTGGGATTCCTGGAGCCTTTAGTACTAGGTTTAATGGTTTAGTAGACCATTTTAAGATGGCCTTAGATTGCTTCTTTGCAGTTTGGTTTGTTGTGGGCAACGTTTGGATCTTTGGAGGTCACTCTTCTCCTTCTGATGCTCCAAAATTATATAGATTATGTATAGTGTTTCTTACCTTCAGTTGCATAGGATATGCTATGCCATTTATACTATGTGCAACAATTTGTTGCTGCCTACCTTGCATAATTTCTGTTTTGGGAATTCGAGAGGACTTTTCTCAAACTAGAGGAGCCACAGTTGAATCTATTAACGCCCTGCCTATATATAAGTTCAGTTTGAAGAAAAACGAAAATAGTGATGATCAGAATGGCAATACAGCTATAGATGAAGGAGGGACCTTGGCTTTCGGGACAGAAAAGGAGCGATCCATATCAGGAGAAGATGCTGTTTGTTGCATTTGCTTGGCAAAATATGCAGATGATGATGAGCTTAGGGAGCTACCCTGCTTCCATGTCTTTCATGTTGAGTGTGTGGACAAATGGCTAAAGATAAATGCGTCTTGTCCTCTCTGTAAAAGCGAGGTAGGTACAAGTTTACTTTCGGCAGAGGAGTCCAGTCAGCCACAGGTTTCCTAA 1218 0.4163 MEQPEAHDGHHHVIDITRNSNDLSSSTQDDQHPEMHLPHNDDQPSVGTQVPIHQSSSSSSRLSSTNSSSTRRGEGYGHHRRSPLNSGLWISVELVVTVGQIIASIVVLSISRNENPKAPLFAWIVGYASGCVATLPILYRRYQNRNQGTGRNLSQPSQGSSGSNPPERTSYTAISVAHVSYEENSLTTESATGNTGIPGAFSTRFNGLVDHFKMALDCFFAVWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDFSQTRGATVESINALPIYKFSLKKNENSDDQNGNTAIDEGGTLAFGTEKERSISGEDAVCCICLAKYADDDELRELPCFHVFHVECVDKWLKINASCPLCKSEVGTSLLSAEESSQPQVS 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0390 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 326 392 IPR013083 -
Lele40g0390 405 FunFam E3 ubiquitin-protein ligase 328 394 - -
Lele40g0390 405 SMART ringv_2 344 386 IPR011016 GO:0008270
Lele40g0390 405 MobiDBLite consensus disorder prediction 17 82 - -
Lele40g0390 405 MobiDBLite consensus disorder prediction 42 72 - -
Lele40g0390 405 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 389 - -
Lele40g0390 405 Pfam Ring finger domain 345 386 IPR001841 -
Lele40g0390 405 ProSiteProfiles Zinc finger RING-type profile. 345 386 IPR001841 -
Lele40g0390 405 SUPERFAMILY RING/U-box 338 391 - -
Lele40g0390 405 CDD RING-H2_RNF111_like 344 386 - -
Lele40g0390 405 MobiDBLite consensus disorder prediction 148 168 - -
Lele40g0390 405 SMART ring_2 345 385 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0390 Lele-ChrLele40 3158232 3160950 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0390 7 392 C3H Transcription Factor Family AT1G80400 58.355 2.56e-161 458