Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0369 ATGCTTGACAAATTTTTGAAGCCCAAGTTCTATAGAAAATGCAAAACGTACCTGGAATGCACAAAGTCGCGGCTAGAGACGATACGGAAGAAGAGGAAAGTAGTGTTGAAGTTTCTGAAGAATGATATCGCCGATCTTCTCAAGAGTGGCCTTGACGACAGTGCATATGGACGAGCTGAAGGGTTCTTGATCGAGGAAAATACATCAGCTTGTTACGAACTCGTTGCAAAGTTTGTTGGGTGCATATCAGATCATCTTCAAGTCCTTTCCAAGGAGAGTAATTGCCCTGACGAATGCAAGGAGGCTATACCATCATTGATATATGCTGCAGCCAGATTTTCTGATCTGCCAGAATTGCGTGACCTCAGAACTCAGTTTAAGGAGAAATTTGGGGATTCTCTTGAACCTTTTACAAGTAAAGAGTTTGTGGGGAAGTCAAGGCCACAACCTACCAAAGAAATGAAGATTCAGAGATTAAATGATATAGCACAAGAATTCTCTATAAAGTGGAACAGCAAAGCTATGGAGGAGAAACTCAATATATCGTATTCATCACTTCAAAACCATGAAATGGAAGGAATTGTGCTCTTGTTGCAGGAGAGGCTCCAGAGCAGTAGTGATGATGACGAAACAAGTACAGACATATCATCCCAGTGTTGCTCAAAGACTCATTCAAGCTCATTAGGAAGCTTTTCTGAGGATGATGAGCTACATTATACCAAGAAACCATCTCCACATAAGATTGTTTCTCCTCCTTGCTTCACACCAGAACCTGATGTTGAAGAGCCAGTTGTGGAAGAAAAGCCAAAACCCAAGTCAGTCAGAACCAGAGGTCCCAGAACACCACGTGGTAATAAAAAAACTGTTTCTGATATTGATTCAAGGGATGAAAAAGATGGGAAAATGGAAGAGCTTTTGACAAATTACAGTATGAAAATATCTAGTTCTGAATCGAAGGGGCAGAAGCAGAATACGATTAGGCACATGAAATCAGATTCAGATGGGCTGCTTACGAGAGGAACATCTCTTCCTGCTCATCTCTTAGCTTCTGTAGAACCAGAAATGCAAAGTGAAGGAGCAAGGCATGTGCATCCTAAGCTCCCGGATTATGAGGACTTAACAGCTCGTCTTGCATCTATCAGAGGGAGATGA 1152 0.4184 MLDKFLKPKFYRKCKTYLECTKSRLETIRKKRKVVLKFLKNDIADLLKSGLDDSAYGRAEGFLIEENTSACYELVAKFVGCISDHLQVLSKESNCPDECKEAIPSLIYAAARFSDLPELRDLRTQFKEKFGDSLEPFTSKEFVGKSRPQPTKEMKIQRLNDIAQEFSIKWNSKAMEEKLNISYSSLQNHEMEGIVLLLQERLQSSSDDDETSTDISSQCCSKTHSSSLGSFSEDDELHYTKKPSPHKIVSPPCFTPEPDVEEPVVEEKPKPKSVRTRGPRTPRGNKKTVSDIDSRDEKDGKMEELLTNYSMKISSSESKGQKQNTIRHMKSDSDGLLTRGTSLPAHLLASVEPEMQSEGARHVHPKLPDYEDLTARLASIRGR 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0369 383 Pfam Regulator of Vps4 activity in the MVB pathway 15 168 IPR005061 GO:0015031
Lele40g0369 383 MobiDBLite consensus disorder prediction 308 322 - -
Lele40g0369 383 MobiDBLite consensus disorder prediction 229 243 - -
Lele40g0369 383 MobiDBLite consensus disorder prediction 209 228 - -
Lele40g0369 383 MobiDBLite consensus disorder prediction 284 305 - -
Lele40g0369 383 FunFam Vacuolar protein sorting-associated protein IST1 5 178 - -
Lele40g0369 383 PANTHER IST1 FAMILY MEMBER 13 381 IPR005061 GO:0015031
Lele40g0369 383 MobiDBLite consensus disorder prediction 205 339 - -
Lele40g0369 383 Gene3D - 4 179 IPR042277 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0369 Lele-ChrLele40 3013466 3015719 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele40g0369 40 3013466 3015719 Lele40g0369 40 3013466 3015719 ECH
Lele37g0420 37 3476957 3478483 Lele40g0369 40 3013466 3015719 hybridization
Lele38g0390 38 3161270 3163565 Lele40g0369 40 3013466 3015719 hybridization