LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele40g0367	ATGATGAGAGAGAATTTGAGGGAATTTGTGGCAGGAGGGGTAGGGGGTGTGGCTGGAGTGATCTCTGGTTATCCACTAGACACCCTCCGAATCCTCCAACAGAATTCAAACATGCCAACTTCTGTGTTCAGATTAATCAAAAATGTGGTTTCCAAGGAAGGACCAGCTTCTCTCTACAGAGGCATGGCTGCACCTTTGGCTGCTATTACTTTTCAGAATGCTATGATTTTTCAAACCTATGCAGTTCTCTCAAGATCCTTTGACTCATCAGTCTCAGCCAACAACCCTCCTTCCTACAACAGCGTTGCTCTAGCAGGATTCATAACAGGTGCTTTACAAAGCACGATTGTGTCCCCAGTAGAACTGGTCAAAATCCGGCTCCAGCTTCAGAGCAAGTGCCAATTAACAACAGAATCCTATAAAGGTCCTTTATCAGTGACAAGGAAGATATGGAACAGAGAAGGTCTTAGAGGCATATTCCGAGGATTCGGCATCACCGTCCTCAGGGATGCGCCTGGTCATGGTGTATACTTCTGGACATATGAGTATATGAGGGAACAACTTCACCCAGGCTGTAGAAAAACTAGTCAAGAAAGCTTGAGTACAATGTTAATAGCAGGAGGCTTAGCTGGGGTAGTGAGTTGGATTGGCTGTTACCCGTTTGATGTTATAAAGACAAGACTACAGGCTCAAACACAATCATCACTGAGATACACAGGCATTATTGATTGCCTGGGAAAGAGGGTAAGAGAAGAAGGACACAATGTTTTGTGGAGGGGTATAGGAACTACAGTGGGTAGAGCTTTTATAGTGAATGGTGCTGTGTTTGCTGCTTATGAGATTGCTATGAGAAGCCTGTCAGACAATAATGGAAGTAATAGCACTAACAATCTAGGAGATCCATTCTTTTCTAGGAACACAAGACAATGA	930	0.4398	MMRENLREFVAGGVGGVAGVISGYPLDTLRILQQNSNMPTSVFRLIKNVVSKEGPASLYRGMAAPLAAITFQNAMIFQTYAVLSRSFDSSVSANNPPSYNSVALAGFITGALQSTIVSPVELVKIRLQLQSKCQLTTESYKGPLSVTRKIWNREGLRGIFRGFGITVLRDAPGHGVYFWTYEYMREQLHPGCRKTSQESLSTMLIAGGLAGVVSWIGCYPFDVIKTRLQAQTQSSLRYTGIIDCLGKRVREEGHNVLWRGIGTTVGRAFIVNGAVFAAYEIAMRSLSDNNGSNSTNNLGDPFFSRNTRQ	309

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele40g0367	309	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	3	86	IPR018108	-
	Lele40g0367	309	Gene3D	Mitochondrial carrier domain	2	295	IPR023395	-
	Lele40g0367	309	Pfam	Mitochondrial carrier protein	102	188	IPR018108	-
	Lele40g0367	309	Pfam	Mitochondrial carrier protein	199	289	IPR018108	-
	Lele40g0367	309	Pfam	Mitochondrial carrier protein	6	87	IPR018108	-
	Lele40g0367	309	PRINTS	Mitochondrial carrier protein signature	112	130	IPR002067	GO:0055085
	Lele40g0367	309	PRINTS	Mitochondrial carrier protein signature	21	35	IPR002067	GO:0055085
	Lele40g0367	309	PRINTS	Mitochondrial carrier protein signature	207	229	IPR002067	GO:0055085
	Lele40g0367	309	PRINTS	Mitochondrial carrier protein signature	8	21	IPR002067	GO:0055085
	Lele40g0367	309	PRINTS	Mitochondrial carrier protein signature	160	178	IPR002067	GO:0055085
	Lele40g0367	309	SUPERFAMILY	Mitochondrial carrier	5	280	IPR023395	-
	Lele40g0367	309	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	97	187	IPR018108	-
	Lele40g0367	309	PANTHER	MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED	4	286	-	-
	Lele40g0367	309	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	198	285	IPR018108	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele40g0367	Lele-ChrLele40	3001708	3003100	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele40g0367	21	292	Antiporters	AT1G79900	61.397	7.18e-124	355

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele40g0367	40	3001708	3003100	Lele41g0841	41	18120074	18124021	CCT
	Lele40g0367	40	3001708	3003100	Lele42g0830	42	21215752	21219719	CCT
	Lele40g0367	40	3001708	3003100	Lele43g0552	43	4977148	4981068	CCT
	Lele40g0367	40	3001708	3003100	Lele44g0515	44	3961532	3964636	CCT
	Lele40g0367	40	3001708	3003100	Lele40g0367	40	3001708	3003100	ECH
	Lele37g0419	37	3463329	3474305	Lele40g0367	40	3001708	3003100	hybridization
	Lele38g0388	38	3143368	3148918	Lele40g0367	40	3001708	3003100	hybridization