Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0360 ATGCCAATTTCTCCAGCTGATCGGTTTGGTGGTCCGCCCCAGCAATGGCAACATAGCAATCCTCCTCCAACCGATGGTGGATCAACACTACCTCCCAAGCCAAATCCACCCCCCGGAGTTCTGTTGAATCAGCAGGCGTCATCCCATAATGTCGCATCTCCTCTTCTGTATTCTACAAATGGCACGAGTTTGGAATCTGAGAAACCATACCATGCACCATCTCCTGCTGTTACCTTGGGACTGTCACAAAGTGCGTTTACATATGAAGAACTTGCATTTGCAACAAATGGATTCTCAGATTCAAACCTTATTGGTCAAGGTGGGTTTGGCTATGTCCATAAAGGAGTCCTCCCAAATGGAAAAACTGTTGCAATTAAGCAGCTCAAATCTGGGAGCAGACAGGGGGAGCGTGAGTTCCAGGCTGAAGTGGAGGTCATTAGTCGAGTCCATCACAGACATCTTGTTTCCTTAGTTGGATACTGCATTGCTGGAGCCCAGAGGTTGCTTGTATATGAGTTTGTCCCAAACAATGCACTAGATTTCCATTTACATGGAAAAGATAGATCAACAATGGACTGGGCAACAAGGATAAAAATTGCCATTGGATCTGCAAAGGGATTGGCATATCTGCACGAGGACTTCCCTTTCAAAATTTGTAGATTATGCAAAAGAAACAATACCTTTAGATTTTCAACATACAAAATTTCACTTTCTCTCAAATACCTGGCTCCAGAATATGCTGCTAGTGGTAAACTCACTGAGAAGTCAGATGTCTTCTCCTTTGGTGTTGTGCTCTTGGAGTTGATTACAGGGAGAAAACCTGTTGACAAAGGTGACAGTATGGTTGAGTGGGTGGGTACAGTACATTCTCTATATTTCTCTCTTAAGAAACAGATTATTTATGGCACTAAGACATTGTTCAAATTACAGGTAAGACCTTTACTTTTTCAAGCTATGGAAAATGGCAACTTCGATGCTCTTGCTGACCCAATGTTGCAGAAGAGTTACGACTCTGATAAGATGCTTCGAATGGTTGCCTGTGCGGCAAATTGTGTGCGCCATTCAGCTAGGAATCGGCCTCGAATGAGCCAGGTAGTTCGGGCTCTGGAAGGGAATATTTCTTTGGATGATCTGAATGAGGGGAGCACACCTGGGCACGGCAGAGCATTCAGTTCCTTTGGAAGTTCAGGTTATGATACCGGCCAATACAACGAGGACCTAAAGAAGTTCAGGAAGCTGGCACTAGAACAAGGAACTAGTGAGTACAGTGGGCCCAGTAGCGATTACGGTCAACATCAATCCACCTCAAGCAGTTCAGGCCTGCTAAACACACAATAG 1338 0.4469 MPISPADRFGGPPQQWQHSNPPPTDGGSTLPPKPNPPPGVLLNQQASSHNVASPLLYSTNGTSLESEKPYHAPSPAVTLGLSQSAFTYEELAFATNGFSDSNLIGQGGFGYVHKGVLPNGKTVAIKQLKSGSRQGEREFQAEVEVISRVHHRHLVSLVGYCIAGAQRLLVYEFVPNNALDFHLHGKDRSTMDWATRIKIAIGSAKGLAYLHEDFPFKICRLCKRNNTFRFSTYKISLSLKYLAPEYAASGKLTEKSDVFSFGVVLLELITGRKPVDKGDSMVEWVGTVHSLYFSLKKQIIYGTKTLFKLQVRPLLFQAMENGNFDALADPMLQKSYDSDKMLRMVACAANCVRHSARNRPRMSQVVRALEGNISLDDLNEGSTPGHGRAFSSFGSSGYDTGQYNEDLKKFRKLALEQGTSEYSGPSSDYGQHQSTSSSSGLLNTQ 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0360 445 Gene3D Phosphorylase Kinase; domain 1 60 173 - -
Lele40g0360 445 Gene3D Transferase(Phosphotransferase) domain 1 174 380 - -
Lele40g0360 445 MobiDBLite consensus disorder prediction 25 39 - -
Lele40g0360 445 Pfam Protein tyrosine and serine/threonine kinase 102 212 IPR001245 GO:0004672|GO:0006468
Lele40g0360 445 Pfam Protein tyrosine and serine/threonine kinase 230 368 IPR001245 GO:0004672|GO:0006468
Lele40g0360 445 MobiDBLite consensus disorder prediction 1 44 - -
Lele40g0360 445 ProSitePatterns Protein kinases ATP-binding region signature. 104 126 IPR017441 GO:0005524
Lele40g0360 445 SUPERFAMILY Protein kinase-like (PK-like) 74 369 IPR011009 -
Lele40g0360 445 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 66 218 - -
Lele40g0360 445 MobiDBLite consensus disorder prediction 419 445 - -
Lele40g0360 445 ProSiteProfiles Protein kinase domain profile. 98 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele40g0360 445 FunFam proline-rich receptor-like protein kinase PERK1 76 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0360 Lele-ChrLele40 2962475 2965844 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0360 72 440 Trihelix Transcription Factor Family AT1G70460 49.497 2.07e-113 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lele40g0360 PK_Tyr_Ser-Thr 4.6e-10 CL0016