LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele40g0359	ATGTATTCACCGTCTCCGTCTCTGGAAACATCTCAGCCTGGCGACTATTTGCTTCCTCTTCCTCCTCCTCCTCCTCCTCCTCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCTTCTTCCTCCTCCTCCTCCTCTTCCTCCTCTTCCTCCTCTTCTTCCTCCTCTTCCTCCAAATTTTGTCAGCCCCATTGACACCTCTCCTCCAGCTACGACTCATTCCATTTCACCTCAGCCTGCCGACTACCGGTCTCCTCTTTCTCCGTCTTTTGGCAGCCCCATTGACACCTCTCCTTCAGCTCCGACTTATTCCATCTCACCTACTGCCACTCCGGCGGGGTTGGCGGAATCGAACGGAAAGTCCGGGGCTACAGTAATTGGAATAGTTATCGGAACTGTATCTGGCTTGCTGCTTATGCTCGTTTGTGTGGGCGTTTGGGCTTATAAAAGGAGAAAGCGGAGGAGGACGAGAAACGATGGTTTGGACGATTATTCTGCTGCTCCTCCTCCATCCCAACCCAAAGCTCCGCCCCAGCAATGGCAACATAGCAATCCTCCTCCAACCGATGGTGGATCAACACTGCCTCCCAAGCCAAGTCCACCCTCCGGAGTTCTGTTGAATCAGCAGGCGTCATCCCAGAATGTCGCATCCCCTCTTCTGTATTCTACAATTGGCACGAGTTCGGAATCTGAGAAACCATACCATGCGCCATCTCCTGCTGTTACCTTGGGACTGTCACAAAGTGCGTTTACATATGAAGAACTTGCATTTGCAACAAATGGATTCTCAGATTCAAACCTTATTGGTCAAGGTGGGTTTGGCTATGTCCATAAAGGAGTCCTCCCAAATGGAAAAACTGTTGCAATTAAGCAGCTCAAATCTGGGAGCAGACAGGGGGAGCGTGAGTTCCAGGCTGAAGTGGAGGTCATTAGTCGAGTCCATCACAGACATCTTGTTTCCTTAGTTGGATACTGCACTGCTGGAGCCCAGAGGTTGCTTGTATATGAGTTTGTCCCAAACAATACCCTAGAATTCCATTTACATGGGGCCGTATCTCAAATTTCAAATTTCAACGTATATGTAATGGTTTCATTCACTGTCATTCCAGGAAAAGATAGATCAACAATGGACTGGGCAACAAGGATAAAAATTGCCATTGGATCTGCAAAGGGATTGGCATATCTGCACGAGGACTGTCACCCGAGAATCATACATCGTGACATCAAGGCATCTAACATTCTTCTTGATGACAATTTTGAGGCCAAGGTTGCAGATTTTGGACTTGCCAAATTTTCATCAGATGCTGAAACCCATGTCTCCACACGAGTAATGGGAACCTTTGGATACCTGGCTCCAGAATATGCTGCTAGTGGTAAACTCACTGAGAAGTCAGATGTCTTCTCCTTTGGTGTTGTGCTTTTGGAGTTGATTACAGGGAGAAAACCTGTTGATAAAACCGAGTCTTTTAAATTTAAAGATGACAGTATGGTTGAGTGGGTGGGTACAGTACACTATCTATATTTCTCTCTTAAGAAACAGATTATTTATGGCACTAAGACATTGTACAAATTACAGGCAAGACCTTTACTTTCTCAAGCTATGGAAAATAGCAACTTCGATGCTCTTGCTGATCCAAGGTTGCAGAAGAGTTACGACTCTGATAAGATGCTTCGAATGGTTGCCTGTGCTGCAAATTGTGTGCGCCATTCAGCTAGGAATCGGCCTCGAATGAGCCAGGTAGTTCGGGCTCTAGAAGGAAATATTTCTTTGGATAATCTGAATGAGGGGAGCACATCTGGCCAAGGCAGAGCATTTAGTTCCTTTGAAAGTTCAGGTTATGATACCGGCCTATACAATAAGGACCTAAAGAAGTTCAGGAAGCTGGCCCTAGAACAAGAAACTAGTGAGTACAGTGGGCCCAGTAGCGATGGCGGTCAACATCAATCCACCTCAAGCAGTTCAGGCCTGGTAAATAGTGGGGAGAATATATAA	1989	0.4666	MYSPSPSLETSQPGDYLLPLPPPPPPPLLPPPPPPPPLLPPPPPLPPLPPLLPPLPPNFVSPIDTSPPATTHSISPQPADYRSPLSPSFGSPIDTSPSAPTYSISPTATPAGLAESNGKSGATVIGIVIGTVSGLLLMLVCVGVWAYKRRKRRRTRNDGLDDYSAAPPPSQPKAPPQQWQHSNPPPTDGGSTLPPKPSPPSGVLLNQQASSQNVASPLLYSTIGTSSESEKPYHAPSPAVTLGLSQSAFTYEELAFATNGFSDSNLIGQGGFGYVHKGVLPNGKTVAIKQLKSGSRQGEREFQAEVEVISRVHHRHLVSLVGYCTAGAQRLLVYEFVPNNTLEFHLHGAVSQISNFNVYVMVSFTVIPGKDRSTMDWATRIKIAIGSAKGLAYLHEDCHPRIIHRDIKASNILLDDNFEAKVADFGLAKFSSDAETHVSTRVMGTFGYLAPEYAASGKLTEKSDVFSFGVVLLELITGRKPVDKTESFKFKDDSMVEWVGTVHYLYFSLKKQIIYGTKTLYKLQARPLLSQAMENSNFDALADPRLQKSYDSDKMLRMVACAANCVRHSARNRPRMSQVVRALEGNISLDNLNEGSTSGQGRAFSSFESSGYDTGLYNKDLKKFRKLALEQETSEYSGPSSDGGQHQSTSSSSGLVNSGENI	662

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele40g0359	662	Gene3D	Phosphorylase Kinase; domain 1	223	336	-	-
	Lele40g0359	662	Gene3D	Transferase(Phosphotransferase) domain 1	365	596	-	-
	Lele40g0359	662	MobiDBLite	consensus disorder prediction	64	104	-	-
	Lele40g0359	662	FunFam	proline-rich receptor-like protein kinase PERK1	239	336	-	-
	Lele40g0359	662	FunFam	Forkhead-associated domain-containing protein / FHA domain-containing protein	366	490	-	-
	Lele40g0359	662	ProSiteProfiles	Protein kinase domain profile.	261	538	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele40g0359	662	MobiDBLite	consensus disorder prediction	1	104	-	-
	Lele40g0359	662	ProSitePatterns	Protein kinases ATP-binding region signature.	267	289	IPR017441	GO:0005524
	Lele40g0359	662	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	402	414	IPR008271	GO:0004672\|GO:0006468
	Lele40g0359	662	SMART	serkin_6	261	546	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele40g0359	Lele-ChrLele40	2949995	2955848	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele40g0359	70	638	Trihelix Transcription Factor Family	AT1G70460	47.203	1.58e-150	451

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Lele40g0359		PK_Tyr_Ser-Thr	6.2e-45	CL0016

Showing 1 to 1 of 1 entries