Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0358 ATGGCGTCTCGCCGGCGAATGTTATTGAAGGTCATAATCCTCGGAGACAGCGGGGTTGGTAAAACATCATTGATGAACCAGTATGTGAACCGTAAGTTCAGTAATCAATATAAGGCTACCATTGGTGCTGATTTTCTCACCAAGGAAGTTCAATTTGAAGATAGGCTGTTCACATTGCAGATTTGGGATACTGCCGGTCAAGAGAGGTTTCAGAGTCTTGGTGTTGCTTTCTACCGTGGTGCAGACTGCTGTGTCCTTGTTTATGATGTAAATGTCATGAAATCTTTTGATAATCTCAATCACTGGCGTGAAGAATTTCTCATTCAGGCTAGTCCATCTGACCCAGAAAACTTCCCATTTGTTGTCTTGGGAAACAAAATAGATCTTGATGGTGGTAATAGCCGAGTTGTTTCTGAGAAGAAAGCGAAGGCATGGTGTGCTTCCAAGGGAAACATACCATACTTTGAGACCTCTGCAAAAGAAGGATTTAATGTAGAGGCTGCTTTTCAGTGTATAGCCAAAAATGCACTCAAGAATGAACCTGAAGAAGAAGTATACCTGCCTGATACAATTGATGTTGGTGTTGGTGGACGACAACAAAGGTCTACAGGCTGTGAATATCGTCTCAGGAAAATCAAAGGGTGTCTTCAACATCGAGCTCTGATCATGGAATCTGCGAAAGAACAAGACGCTGGCCTGCTGCACCAGATCCTACCACCACGTCTCGAAGATGCTGGCCTCGAAGAATGTGCTCTTCCACCGGAATCCATCAAAGAAGCCTTCTTCAAAGCCGCCTCCGCCGTGAAATCGCGAGCTACCTTCATTTTATCTGCTGATGACGAAGATGATGATGCAACTTGTGTTAAGGATCCTTGGCCCACCGCGAAGGATGCCTCGGATGTGGGTGACAAGGATGATGAAGAGAAGGTTAGAGACAAGGTAATCGTGGGGGAAGAGGGAAAGAAATTGGGAGAGGAGGGGAAAGCTTGTGTGGATGGTTTGAAAGGATTGGATATTGAAGAAGATACGAGACCAGTGATGACGTTGATGGGGAAGAGAAAGAGAAAGAAGGTAAAAGACCAACTCTGGTTGAAGGTTTTGTTTGAAATCGTTGATCGTGGTTTGTTCTTGGTCTGTATGCTTTCCACTTCAATCTGA 1158 0.4465 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNHWREEFLIQASPSDPENFPFVVLGNKIDLDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFQCIAKNALKNEPEEEVYLPDTIDVGVGGRQQRSTGCEYRLRKIKGCLQHRALIMESAKEQDAGLLHQILPPRLEDAGLEECALPPESIKEAFFKAASAVKSRATFILSADDEDDDATCVKDPWPTAKDASDVGDKDDEEKVRDKVIVGEEGKKLGEEGKACVDGLKGLDIEEDTRPVMTLMGKRKRKKVKDQLWLKVLFEIVDRGLFLVCMLSTSI 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0358 385 ProSiteProfiles small GTPase Rab1 family profile. 4 223 - -
Lele40g0358 385 FunFam Ras-related protein Rab7 1 189 - -
Lele40g0358 385 Gene3D - 1 189 IPR027417 -
Lele40g0358 385 ProSiteProfiles small GTPase Rho family profile. 2 186 - -
Lele40g0358 385 SMART ran_sub_2 14 221 - -
Lele40g0358 385 Pfam Ras family 10 177 IPR001806 GO:0003924|GO:0005525
Lele40g0358 385 PANTHER RAB FAMILY 1 199 - -
Lele40g0358 385 SMART rho_sub_3 11 179 IPR001806 GO:0003924|GO:0005525
Lele40g0358 385 SMART ras_sub_4 6 179 - -
Lele40g0358 385 ProSiteProfiles small GTPase Ras family profile. 3 223 IPR001806 GO:0003924|GO:0005525
Lele40g0358 385 SMART rab_sub_5 9 179 - -
Lele40g0358 385 CDD Rab7 9 182 - -
Lele40g0358 385 TIGRFAM small_GTP: small GTP-binding protein domain 10 172 IPR005225 GO:0005525
Lele40g0358 385 PRINTS Transforming protein P21 ras signature 32 48 - -
Lele40g0358 385 PRINTS Transforming protein P21 ras signature 50 72 - -
Lele40g0358 385 PRINTS Transforming protein P21 ras signature 116 129 - -
Lele40g0358 385 PRINTS Transforming protein P21 ras signature 9 30 - -
Lele40g0358 385 PRINTS Transforming protein P21 ras signature 154 176 - -
Lele40g0358 385 Coils Coil 384 385 - -
Lele40g0358 385 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 185 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0358 Lele-ChrLele40 2941991 2947269 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0403 37 3361939 3362827 Lele40g0358 40 2941991 2947269 hybridization
Lele38g0382 38 3095770 3110151 Lele40g0358 40 2941991 2947269 hybridization