Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0351 ATGTCCAATAACCCACCTCCATCTTCTCACACTAAAGACTTCTTCGCTTCTCCGGCTCTTTCTCTCAGCCTCGCTGGGATTTTCCGTCATGCCGGAGAAGCAGCTGCGGCGGCAGGCGCCGCCACGTCCAGCAGGGAGGTGGAGGAAGGGGATGAAGGGAGCGGCGGCGGTGGCCGGCGAGACGAAACAGTGGAGATTAGCAGCGAGAACTCCGGCCACACGAGATCCAGATCGGAAGATATTGATTTTGAAGGAGAAGGAGAGCATGACGACGACGGTGGCGATGGTGACGGAGATAAGAACAAGAAGAAGAAAAGGAAGAAGTATCACAGGCACACAGCTGAACAAATCAGAGAAATGGAAGCGCTTTTCAAAGAGTCACCACATCCAGATGAAAAGCAAAGGCAACAACTTAGCAAGCAATTAGGCCTTGCTCCTAGGCAAGTCAAGTTCTGGTTCCAGAATCGTCGAACCCAAATCAAGGCAATCCAAGAACGTCATGAGAATTCATTGTTAAAGGCAGAAATCGAGAAACTGAGAGACGAAAACAAGCAAATGAGAGACACCACTAACAAAGCATGCTGCCCCAACTGTGGCATCCCCACCACCAGCAGAGACACCGTCTTGTCCACCGAAGAACAACAACTTCGTATCGAAAATGCCAAACTAAAAGCCGAGGTAGAGAAGTTGAGAAGCGTAATAGGGAAGTACCCACAAGGGACGACGTCACCGTCATGTTCAGGAGGGAACGGCGAGCAAGAGAACAGGAGCTCATTGGAATTCTACACAGGAATATTTGGGCTTGACAAGTCGAGAATAATGGAGATTGTGAATCAAGCTTTAGAGGAGCTCGTGAAAATGGCCACAGTGGGAGAACCATTGTGGGTTCGGAGTTTAGAGACTGATCGTGAAATACTGAACTATGATGAGTATGTGAAGGAGTTCGGAGCGAAATCTGAAAGTTCAAGCCACCATGGAAGACCAAAAAGATCCATCGAAGCTTCCAGAGAAACTCGAGTTGTTTTTGTTGATCTCCCTCACCTCCTTCACAGATTCTTAGATGTGAATCAATGGAAGGGGATGTTTCCATGCTTAATATCAAAAGCAGCAACTGTAGATGTGATTTGCAGTGGAGAAGGAGCTAACAGGAATGGTGCGATTCATCTGATGTTTGCTGAGCTACAAATGTTGACGCCAATGGTGGCCACAAGAGAAGTCTATTTCGTGAGGTACTGTAAGCAACTCAGTGCAGAGCAGTGGGCTATCGTGGACGTGTCAGTGGACAAGGTTGAAGACAACATCGATGCCTCTCTCGTGAAATGTCGAAAACGCCCCTCTGGTTGCATTATTGAAGATAAGTCTAATGGCCATTGCAAGGTAACTTGGGTGGAGCACTTGGAATGCCAGAAGAGCACAGTGCACACAATGTACCGCACAGTTGTAAACAGTGGCATGGCTTTTGGTGCAAGGCACTGGGTTGCCACCCTCCAACTTCAATGTGAACGTCTCGTTTTCTTCATGGCTACCAATGTTCCCACGAAGGATTCAGCTGGCGTTGCAACGTTAGCAGGAAGGAAGAGCATATTGAAGCTAGCGCAGAGAATGACATGTAATTTCTACCATGCCATTGGAGCTTCGAGCTTCCATACATGGACTAAGGTCACCAGCAAAACAGGGGAAGACATCAGAATAAGTTCTAGGAAGAATTTGAATGATCCTGGGGAACCTCTAGGGTTGATCTTGTGTGCAGTTTCTTCTATGTGGCTCCCAGTTTCTCCTAATGTTCTGTTCGATTTCTTGAGGGATGAAGCTCGCAGATCTGAGTGGGATATCATGTCCAATGGTGCTTCAGTGCAATCCATGGCAAACTTAGCCAAAGGACAAGACAGAGGCAATTCAGTGACCATCCAAACAATAAAATCAAAAGAGAATAGCATGTGGTTTCCCAAAATAAAATCCAATGCTTGA 1968 0.4721 MSNNPPPSSHTKDFFASPALSLSLAGIFRHAGEAAAAAGAATSSREVEEGDEGSGGGGRRDETVEISSENSGHTRSRSEDIDFEGEGEHDDDGGDGDGDKNKKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKAEIEKLRDENKQMRDTTNKACCPNCGIPTTSRDTVLSTEEQQLRIENAKLKAEVEKLRSVIGKYPQGTTSPSCSGGNGEQENRSSLEFYTGIFGLDKSRIMEIVNQALEELVKMATVGEPLWVRSLETDREILNYDEYVKEFGAKSESSSHHGRPKRSIEASRETRVVFVDLPHLLHRFLDVNQWKGMFPCLISKAATVDVICSGEGANRNGAIHLMFAELQMLTPMVATREVYFVRYCKQLSAEQWAIVDVSVDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVTWVEHLECQKSTVHTMYRTVVNSGMAFGARHWVATLQLQCERLVFFMATNVPTKDSAGVATLAGRKSILKLAQRMTCNFYHAIGASSFHTWTKVTSKTGEDIRISSRKNLNDPGEPLGLILCAVSSMWLPVSPNVLFDFLRDEARRSEWDIMSNGASVQSMANLAKGQDRGNSVTIQTIKSKENSMWFPKIKSNA 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0351 655 CDD START_ArGLABRA2_like 270 501 - -
Lele40g0351 655 MobiDBLite consensus disorder prediction 32 115 - -
Lele40g0351 655 Pfam START domain 276 502 IPR002913 GO:0008289
Lele40g0351 655 Gene3D - 347 498 IPR023393 -
Lele40g0351 655 Pfam Homeodomain 106 161 IPR001356 GO:0003677
Lele40g0351 655 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 104 647 IPR042160 -
Lele40g0351 655 SMART HOX_1 105 167 IPR001356 GO:0003677
Lele40g0351 655 Coils Coil 162 192 - -
Lele40g0351 655 SMART START_1 275 502 IPR002913 GO:0008289
Lele40g0351 655 ProSitePatterns 'Homeobox' domain signature. 138 161 IPR017970 GO:0000981|GO:0006355
Lele40g0351 655 Gene3D - 94 176 - -
Lele40g0351 655 SUPERFAMILY Bet v1-like 268 502 - -
Lele40g0351 655 MobiDBLite consensus disorder prediction 45 83 - -
Lele40g0351 655 CDD homeodomain 110 161 IPR001356 GO:0003677
Lele40g0351 655 ProSiteProfiles 'Homeobox' domain profile. 103 163 IPR001356 GO:0003677
Lele40g0351 655 SUPERFAMILY Bet v1-like 524 640 - -
Lele40g0351 655 ProSiteProfiles START domain profile. 266 505 IPR002913 GO:0008289
Lele40g0351 655 Coils Coil 213 233 - -
Lele40g0351 655 FunFam Homeobox-leucine zipper protein HDG1 92 179 - -
Lele40g0351 655 FunFam Homeobox-leucine zipper protein GLABRA 2 275 501 - -
Lele40g0351 655 SUPERFAMILY Homeodomain-like 96 164 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0351 Lele-ChrLele40 2909853 2918744 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0351 66 647 Homeobox Transcription Factor Family AT1G79840 65.878 0.0 775
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele40g0351 START 3.5e-56 CL0209