Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0339 ATGTCTAAACCATTAGATCATGATTACATAGGCTTAGCAGCATCAGAAAATCCTTCCATGGAGAAAAACTCTGAGAGAATATCCTCTCCTTCTTCTGCTGATTCGTCTACTCTTTCTTCTTTTAATTTCAAAGAGACTGAGCTCAGGCTTGGCCTTCCTTGTAGTAATTTTCCTCCTCCTGAGAGGAAATCTGGAAGTGGAATTTCTCTTTTTGGCAAAGATTTGCAGAGTAATCATAATAATACTGATCCTAGTGTTAATAATGGGTTATACTCTTCTTCTTCTTCTTCTTCCCTTTTGAAGAACAACAATGTGACTGGAGTTAAGAGGGGGTTTTATGATGCTATTGATGGAAAATGGGGTTTCTCTATGAGTGAAAAAATTATTGCATCTGAAGCTAATTTGGGAAAAGGAGCTTATTTGTTCTCTCCCAAAGTAGGAGGGAATCTTGTGAAGACTCCTCTCATTTCTGTAGAAGCTTCTGCAAATCCTGAACAAAAAAACACTCAAGATGGCGGAATAGTTCAAGAGAAGAAGAAACCTCAAGTTACTGTTTCTGCTACAAATGAACATGGAAGTTCTCCTCCTTCTGCTAAGGCACAGGTTGTGGGATGGCCACCAATTCGATCCTTTCGAAAGAACAGCATGGCCACTAATTCGGCGAAGAACAATGATGAAGGCGAGGCAAAAGCAGGATATGGCTGTCTCTATGTGAAGGTCAGCATGGATGGTGCACCTTATCTCAGAAAGGTTGATCTCAAAACCTTTACCAACTATGTGGAACTTTCTTCAGCTCTTGAGAAGATGTTCAGCTGCTTTACCATTGGTCAATGCAGTTCTGGAGGACTCGCCGTGAAAGGTGGCCTGAGCGAGAGCTCTTTGAGGGACCTTCTTCATGGTTCTGAATATGTTCTTACTTATGAAGATAAGGATGGAGATTGGATGCTTGTTGGTGATGTTCCCTGGGAGATGTTCACTGACTCATGTAGGAGATTAAGGATCATGAAAGGTTCTGAGGCGATCGGGCTCGCTCCAAGGGTGATGGAAAAATCCAGGAGCCAAAACTAG 1068 0.4195 MSKPLDHDYIGLAASENPSMEKNSERISSPSSADSSTLSSFNFKETELRLGLPCSNFPPPERKSGSGISLFGKDLQSNHNNTDPSVNNGLYSSSSSSSLLKNNNVTGVKRGFYDAIDGKWGFSMSEKIIASEANLGKGAYLFSPKVGGNLVKTPLISVEASANPEQKNTQDGGIVQEKKKPQVTVSATNEHGSSPPSAKAQVVGWPPIRSFRKNSMATNSAKNNDEGEAKAGYGCLYVKVSMDGAPYLRKVDLKTFTNYVELSSALEKMFSCFTIGQCSSGGLAVKGGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSEAIGLAPRVMEKSRSQN 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0339 355 FunFam Auxin-responsive protein 230 347 - -
Lele40g0339 355 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 42 342 IPR003311 GO:0005634|GO:0006355
Lele40g0339 355 MobiDBLite consensus disorder prediction 1 40 - -
Lele40g0339 355 MobiDBLite consensus disorder prediction 17 40 - -
Lele40g0339 355 MobiDBLite consensus disorder prediction 181 196 - -
Lele40g0339 355 SUPERFAMILY CAD & PB1 domains 235 336 - -
Lele40g0339 355 MobiDBLite consensus disorder prediction 161 201 - -
Lele40g0339 355 MobiDBLite consensus disorder prediction 52 98 - -
Lele40g0339 355 Gene3D - 230 349 - -
Lele40g0339 355 Pfam AUX/IAA family 45 346 IPR033389 -
Lele40g0339 355 MobiDBLite consensus disorder prediction 70 98 - -
Lele40g0339 355 ProSiteProfiles PB1 domain profile. 235 337 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0339 Lele-ChrLele40 2787523 2789888 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0339 239 345 B3 DNA Binding Superfamily AT4G23980 30.841 1.26e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele40g0339 AUX_IAA 2.1e-88 CL0072