Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0325 ATGCATACTTGGTCTTGGAGTTATACTGTGTCAGGTTTTGCTGTAGCTGAACTAGCGAAAGATGGTAAAATAGCACTGGACAACGGCAAGTATGTCCGTTATACGCCTGAGCAGGTTGAAGCCCTTGAGAGGCTTTACCACGAATGCCCCAAACCTAGTTCCATTCGTCGCCGGCAGCTTATCCGCCAGAGCCCTATTCTCTCCAACATTGAGCCGAAGCAAATTAAAGTTTGGTTCCAGAACAGAAGATGCAGAGAGAAGCAGAGAAAAGATGCTTTGCGCCTTCAAGCTGTTAATAGGAAGTTGACAGCCATGAACAAGCTCTTGATGGAGGAGAATGATAGGTTACAGAAGCAGGTGTCTCAATTGGTGTACGAAAATGGCTACTTTCGTCAACACACACAAAATGTGAGAGTTTTGCGTGACGTGCTTCTAACAACAATTGCAAGTAAGGACACAAGCTGTGAATCTGCCGTGACGAGCGGTCAACACAGTTTGACGACCCCAAGGGATGCAAGTCCTGCAGGGTTAGTGGAATAAGAAACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGGACTGCTGTTGAGTGGGTCCAGATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGCGTGGCAGCACGAGCCTGTGGTCTAGTGGGTCTTGAACCCACAAGGGTTGCAGAAATCCTCAAAGATCTGCCTTCATGGTTTCGCGATTGCCGAGCTGTTGATGTTCTGAATGTGCTGCCCACAGCTAATGGTGGAACCATAGAGCTGCTTTATATGCAGCTATATGCGCCAACAACTTTGGCGCCTGCTCGTGACTTTTGGCTGTTGCGCTACTCATCTGTTTTAGAAGATGGCAGCCTTGTGGTCTGTGAGAGGTCTCTTAAAAATACTCAAAATGGTCCAAGCATGCCACCTGCGCAGCATTTTGTGAGAGCAGAGATGCTTCCCAGTGGGTACTTGATAAGACCTTGTGAGGGGGGTGGCTCTGTCATACACATTGTTGATCACATGGATTTGGAGGCCCTACGCCAGCTTAGACAGATATCTCATGACGTTTCTCAGCCTAATGTCAATGGGTGGGGCAGACGACCCGCAACTTCAAGAGCACTTAGTCAGAGACTGAGCAGGGGTTTCAATGAGGCTCTAAATGGGTTTACTGATGAAGGATGGTCAATGATTGGCAATGATGGTGTGGATGATGTAATGATCCTGGTGAATTCATCTCCTGAAAAATTAATTGGTTTAGGTCTGCCCTTTGCCAATGGATTTCCATCCATTAGCAATGCAGTCTTATGTGCCAAAGCATCAATGTTGTTACAGAATGTGCCTCCGGCCATTCTCCTTAGGTTTCTACGGGAGCATAGATCAGAATGGGCAGACAACAACATGGATGCCTACTCAGCTGCTTCCATTAAAGTTGGTCCTTGTAGCTGGCCAGGATCTCGTGTTGGAAACTATGGTGGTCAAGTTATACTTCCTCTTGCCCATACTATTGAGCATGAAGAGCTTCTGGAAGTCGTTAAATTGGATGGAATTGCTCCTGCTACTGAGGACACAATAATGCCAAGAGAGCTGTTTCTTTTGCAACTCTGTAGTGGGATGGATGAGAATGCTGTTGGCACCTGTGCTGAGCTTATATTTGCTCCAATTGATTCAGCCTTTGCTGATGATGCCCCCCTTTTACCTTCTGGATTTCGCATTATTCCTCTTGATTTTGGGAAGGAAGCCTCTAGCCCAAATCGAACCCTTGACCTTGCATCTTCTCTTGACATTGGCCCTGCTGGAAATAAGGCATCTAATGATTATGCTGGAAATTCTGGCTATATGAGATCTGTGATGACAATAGCATTTGAATTTACATTCGAAAGTCATATGCAGGAGCATGTAGCATCCATGGCACGACAATATGTTCGCAGCATCATATCATCTGTCCAAAGGGTGGCATTAGCTCTTTCTCCATCTCATTTGGGGTCAGATGCTGGGCTTAGGTCACCGCTTGGATTTCATTTCAGCTTGATTATGTTCTATACCTTCACAGTTGGGGTCGATATGTTTCTTCAAACTGGTTTTGCTGATGCTCTATTGTGCTGCACTTTAAAGGCAACGCCAGTGTTCACTTTTGCCAACCAGGCAGGGCTTGACATGCTGGAGACAACCTTAGTTGCACTACAAGACTTAAGTTTGGAGAAAATATTTGATGATCATGGTAGAAAGATCCTCTGTTCCGAGTTTCCCCAGATTATACAACAGGGCTTTGCTTGCCTTCAAGGTGGTATCTGTGTCTCAAGCATGGGGCGGTCAGTCTCACATGAGAGAGTTGTGGCCTGGAAAGTGCTGAATGAAGAGCAGAATGCTCATTGCATCTGCTTTATGTTCGTGAACTGGTCTTTTGTTTGA 2439 0.4604 MHTWSWSYTVSGFAVAELAKDGKIALDNGKYVRYTPEQVEALERLYHECPKPSSIRRRQLIRQSPILSNIEPKQIKVWFQNRRCREKQRKDALRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQNVRVLRDVLLTTIASKDTSCESAVTSGQHSLTTPRDASPAGLVEXETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDLPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYSSVLEDGSLVVCERSLKNTQNGPSMPPAQHFVRAEMLPSGYLIRPCEGGGSVIHIVDHMDLEALRQLRQISHDVSQPNVNGWGRRPATSRALSQRLSRGFNEALNGFTDEGWSMIGNDGVDDVMILVNSSPEKLIGLGLPFANGFPSISNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYSAASIKVGPCSWPGSRVGNYGGQVILPLAHTIEHEELLEVVKLDGIAPATEDTIMPRELFLLQLCSGMDENAVGTCAELIFAPIDSAFADDAPLLPSGFRIIPLDFGKEASSPNRTLDLASSLDIGPAGNKASNDYAGNSGYMRSVMTIAFEFTFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLGSDAGLRSPLGFHFSLIMFYTFTVGVDMFLQTGFADALLCCTLKATPVFTFANQAGLDMLETTLVALQDLSLEKIFDDHGRKILCSEFPQIIQQGFACLQGGICVSSMGRSVSHERVVAWKVLNEEQNAHCICFMFVNWSFV 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0325 812 Gene3D - 213 365 IPR023393 -
Lele40g0325 812 SUPERFAMILY Homeodomain-like 29 92 IPR009057 -
Lele40g0325 812 CDD bZIP 82 121 - -
Lele40g0325 812 ProSiteProfiles 'Homeobox' domain profile. 25 89 IPR001356 GO:0003677
Lele40g0325 812 Pfam MEKHLA domain 705 811 IPR013978 -
Lele40g0325 812 CDD homeodomain 30 90 IPR001356 GO:0003677
Lele40g0325 812 SMART HOX_1 27 93 IPR001356 GO:0003677
Lele40g0325 812 SUPERFAMILY Bet v1-like 181 354 - -
Lele40g0325 812 Gene3D - 25 94 - -
Lele40g0325 812 Pfam START domain 180 355 IPR002913 GO:0008289
Lele40g0325 812 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 26 812 IPR044830 GO:0003700
Lele40g0325 812 ProSiteProfiles START domain profile. 168 385 IPR002913 GO:0008289
Lele40g0325 812 SMART START_1 177 391 IPR002913 GO:0008289
Lele40g0325 812 Coils Coil 95 126 - -
Lele40g0325 812 Pfam Homeodomain 30 88 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0325 Lele-ChrLele40 2667799 2676387 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0325 20 764 Homeobox Transcription Factor Family AT1G52150 75.000 0.0 1194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele40g0325 START 1.1e-43 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g0493 43 4481572 4491294 Lele40g0325 40 2667799 2676387 CCT
Lele44g0462 44 3488295 3496404 Lele40g0325 40 2667799 2676387 CCT
Lele40g0325 40 2667799 2676387 Lele40g0325 40 2667799 2676387 ECH
Lele37g0369 37 3096706 3103461 Lele40g0325 40 2667799 2676387 hybridization
Lele38g0346 38 2802942 2812573 Lele40g0325 40 2667799 2676387 hybridization