Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0316 ATGACGAACAGAACTGCTCCTGGGCCAGTAGTTGGTTGGCCTCCAATTCGTTCATTTAGGAAGAACCTTGCAAGCAGCAACAGCGGCATTTCTAAGACAGCTAATGAGACACAACAGCAGCATGATGTTGCAGACAAGGTTGATGGGAAGAAACCTGTTGTTGTTGACAACGTTGGTAATAAAGGTCTGTTTGTGAAGATCAACATGGATGGAGTTCCCATAGGGAGAAAAGTGGACCTTAATGCCTATGACAGCTATGAAAAACTCTCTTCTGCAGTTGATGAACTCTTCAGATGCCTCCTTGCTGTACATGATAGTGAAAGTTGTTTTTCTTTAATTGACTGTTCAGCTCAAAGAGATTCCTGTGCTGGAGAAATCAAGAACAAGGAAGAGGAAGAAGAAAAGGTTATAACAGGTTTATTGGATGGAAGTGGGGAATATACTCTTTTGGTAACAAGCAAGGCCAGAAAGCCACTTGCGCCACTTGAGAGGAGGCAATGA 501 0.4311 MTNRTAPGPVVGWPPIRSFRKNLASSNSGISKTANETQQQHDVADKVDGKKPVVVDNVGNKGLFVKINMDGVPIGRKVDLNAYDSYEKLSSAVDELFRCLLAVHDSESCFSLIDCSAQRDSCAGEIKNKEEEEEKVITGLLDGSGEYTLLVTSKARKPLAPLERRQ 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0316 166 Coils Coil 165 166 - -
Lele40g0316 166 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 9 149 IPR003311 GO:0005634|GO:0006355
Lele40g0316 166 MobiDBLite consensus disorder prediction 26 45 - -
Lele40g0316 166 Pfam AUX/IAA family 3 149 IPR033389 -
Lele40g0316 166 Gene3D - 57 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0316 Lele-ChrLele40 2549403 2550937 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele40g0316 AUX_IAA 1.3e-35 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g1073 39 19339271 19342176 Lele40g0316 40 2549403 2550937 ECH
Lele40g0316 40 2549403 2550937 Lele40g0316 40 2549403 2550937 ECH
Lele37g0353 37 2938337 2940003 Lele40g0316 40 2549403 2550937 hybridization
Lele38g0336 38 2675411 2678277 Lele40g0316 40 2549403 2550937 hybridization