Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0311 ATGCAAAGCTCTGTCATGAGGGTCCTCAGAGCTGTCTTCACCACCAAGCTCCACCTGCTATACCCCTCCAATATCAAACGCCTTTCAGCTCCTTCTCTCATTTCCTTTTGTTCATTTCCGAACCCTCGATTTTCTCGTTATTCCCATTCCGCAAGCAGTCATCAGATAGACTCGAGCTCTGACATTGATACCCCAGAAGAACCGAATACCAGTTTAAAAACTCATTCCGAAGAAAGAACTTGGTCGCGACATGGTCATTTATTTAAATCATCTAGTGAAGGGAAGAAGAATACGTTGGACTCTGGGGATAATAAAGTTGAAAACTTTGGAAGCCAAAGTGAAAATGGAAGAGCGACGGAGGCGAGCTCAGTTCGGGGTACCGAACAAGATGGAGGTATTCGAAGGAGAGGTGGGATCAAGAAAAAGGAAAAAGGAAAAAGCCATTGGGTTTGCTCCAATTGTGGGTATACGGCTGGGCAATGGTTCGGATTTTGCCGCTCGTGTAATAGTGCTTCCACAATGAAAGAGTTTCGTGAAGCGAAAGTCAGTGGTCCAGGTAAGGTTAGTGGCTTTTCAGTTTCTGAAAATGTAATGGGGTCGTGGCTCCCTCAACAGGCAGCTGAATTGCGTCCTTTAAAATTGACGGATGTAAACCGTGGAGTTAATCATCAAGAATGGAGATTTCCTTTCTCTGGTCCTTTTGGAAATGAAGTTTCAAGAGTGCTCGGAGGTGGTCTTGTACCAGGCTCTTTGATTTTAGTTGGTGGTGATCCTGGTGTTGGGAAGAGTACACTTTTGTTGCAGATTGCTGCAATGATAGCAGAAGGGTGCAAAAGTGATGAAGCAGCCCCAGTTGTATATGTATCTGGTGAAGAGAGCATTGAGCAACTCGGTAACAGAGCAGATCGCCTGGGGATTGCATCGGAAATATATTTATACTCAAGTACTGATATTGAGGACATATTGGAGAAAACTCAGCGTCTCTCCGCTCGAGCTGTAGTGGTTGATTCAATACAAACTGTTTATTTGAAAGGAATAATTGGAAGTGCTGGAGGGATTTCGCAGGTGAAGGAATGTACTTCAGCATTGCTGCGATATGCCAAGCGGACTAACACTGCAGTTTTTTTGATTGGGCATGTAACAAAATCTGGAGATATAGCAGGACCTCGTGTCTTGGAGCACATTGTTGATGTTGTTTTATACATGGAAGGTGAGAAGTACTCTTCCCATCGAATGCTTCGAGTGGTGAAAAATCGGTTTGGATCCTCTGATGAGCTTGGAGTCTTTGAGATGTCACAGTTAGGCCTCCGGGCTGCTTCAAATGCCAGTGAAATATTTCTAAGTGAGCAACACTTAGATTCAGATGTTTTAGCTGGATTAGCTATTGCTGTCGTAATGGATGGGTCTCGAGCTTTCCTTATTGAAATTCAGGCACTTTGTGTTTCTGGCTCAACTGTCTCAAGGCATGTTAATGGCATTCAACAAAGTAGAGCTGATATGATCATATCTGTACTTATAAAGCAAGCTGGACTTCGACTTCAAGAAAATGCTGTGTTTTTAAATGTTGTTAGCGGATTTCAGCTGACTGAGACTGCTGGAGATCTGGCAATGGCAGCTGCAATTTGCAGCAGTTTCTTGGAATTCCCTCTTCCCAAGAACATAGCGTTCATTGGTGAAATTGGCCTCGCTGGTGAGCTCCGCACGGTTCCTGGATTGGATAAAAGGGTCAACACCGTTGCGAAATTGGGTTACGGAATGTGTGTTGTACCAAAAGAAGCAGTAAAACTTTTAGGAACAGATGGTTTTGGGAAGATGAAACTTGTAGGTTGCAAGAATCTGAAGGAGGTTATTAACAGTGTTTTTAAAGAACGAAAATGA 1878 0.4356 MQSSVMRVLRAVFTTKLHLLYPSNIKRLSAPSLISFCSFPNPRFSRYSHSASSHQIDSSSDIDTPEEPNTSLKTHSEERTWSRHGHLFKSSSEGKKNTLDSGDNKVENFGSQSENGRATEASSVRGTEQDGGIRRRGGIKKKEKGKSHWVCSNCGYTAGQWFGFCRSCNSASTMKEFREAKVSGPGKVSGFSVSENVMGSWLPQQAAELRPLKLTDVNRGVNHQEWRFPFSGPFGNEVSRVLGGGLVPGSLILVGGDPGVGKSTLLLQIAAMIAEGCKSDEAAPVVYVSGEESIEQLGNRADRLGIASEIYLYSSTDIEDILEKTQRLSARAVVVDSIQTVYLKGIIGSAGGISQVKECTSALLRYAKRTNTAVFLIGHVTKSGDIAGPRVLEHIVDVVLYMEGEKYSSHRMLRVVKNRFGSSDELGVFEMSQLGLRAASNASEIFLSEQHLDSDVLAGLAIAVVMDGSRAFLIEIQALCVSGSTVSRHVNGIQQSRADMIISVLIKQAGLRLQENAVFLNVVSGFQLTETAGDLAMAAAICSSFLEFPLPKNIAFIGEIGLAGELRTVPGLDKRVNTVAKLGYGMCVVPKEAVKLLGTDGFGKMKLVGCKNLKEVINSVFKERK 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0311 625 ProSiteProfiles RecA family profile 1. 224 380 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Lele40g0311 625 MobiDBLite consensus disorder prediction 47 67 - -
Lele40g0311 625 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 239 431 IPR027417 -
Lele40g0311 625 PRINTS DNA repair protein radA signature 336 360 - -
Lele40g0311 625 PRINTS DNA repair protein radA signature 410 436 - -
Lele40g0311 625 PRINTS DNA repair protein radA signature 375 403 - -
Lele40g0311 625 PRINTS DNA repair protein radA signature 240 268 - -
Lele40g0311 625 PRINTS DNA repair protein radA signature 485 508 - -
Lele40g0311 625 PRINTS DNA repair protein radA signature 151 175 - -
Lele40g0311 625 MobiDBLite consensus disorder prediction 103 126 - -
Lele40g0311 625 TIGRFAM sms: DNA repair protein RadA 144 616 IPR004504 GO:0003684|GO:0005524|GO:0006281
Lele40g0311 625 Gene3D - 456 625 IPR014721 -
Lele40g0311 625 Gene3D - 237 433 IPR027417 -
Lele40g0311 625 SMART AAA_5 248 406 IPR003593 -
Lele40g0311 625 Pfam AAA domain 241 384 - -
Lele40g0311 625 Pfam Rubredoxin metal binding domain 149 176 IPR041166 -
Lele40g0311 625 PANTHER DNA REPAIR PROTEIN RADA 54 623 - -
Lele40g0311 625 MobiDBLite consensus disorder prediction 68 102 - -
Lele40g0311 625 FunFam DNA repair protein radA isogeny 455 624 - -
Lele40g0311 625 MobiDBLite consensus disorder prediction 47 142 - -
Lele40g0311 625 Pfam Subunit ChlI of Mg-chelatase 502 592 - -
Lele40g0311 625 FunFam DNA repair protein RadA 227 437 - -
Lele40g0311 625 SUPERFAMILY Ribosomal protein S5 domain 2-like 417 621 IPR020568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0311 Lele-ChrLele40 2502857 2509419 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele40g0311 40 2502857 2509419 Lele41g0915 41 18644887 18654110 CCT
Lele40g0311 40 2502857 2509419 Lele42g0895 42 21701590 21710379 CCT
Lele40g0311 40 2502857 2509419 Lele43g0493 43 4481572 4491294 CCT
Lele40g0311 40 2502857 2509419 Lele44g0462 44 3488295 3496404 CCT
Lele40g0311 40 2502857 2509419 Lele40g0311 40 2502857 2509419 ECH
Lele38g0331 38 2622252 2628895 Lele40g0311 40 2502857 2509419 hybridization